PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000915.1_g00003.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ARR-B
Protein Properties Length: 555aa    MW: 62136.9 Da    PI: 6.5109
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000915.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.61.2e-27313366256
                  G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                               +++WtpeLH++Fv+aveqL G + A+P++ile+mkv+gLt+++v+SHLQkYR++
  Itr_sc000915.1_g00003.1 313 LKVDWTPELHKKFVQAVEQL-GVDAAIPSRILEVMKVEGLTRHNVASHLQKYRMH 366
                              5899****************.********************************96 PP
2Response_reg32.25.5e-12201261109
                              EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHH CS
             Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeee 84 
                              vl+ d++p+ +  +r+ le+ +y +v ++++  eal  + +k   +++ ++ ++  ++d  e++k +++++ +lp i+ +  +  +
  Itr_sc000915.1_g00003.1  20 VLLLDEDPNSAAEMRSKLEEMNY-IVSTFQKENEALLAISNKSeaFHVAIIEVKTGNSD--EAFKFLETAK-DLPTIMTSNIDCLN 101
                              8999*******************.***************777777********999955..5555555555.788888887777** PP

                              HHHHHHHTTESEEEESS--HHHHHH CS
             Response_reg  85 dalealkaGakdflsKpfdpeelvk 109
                              ++ +++ +Ga +fl Kp + ++l++
  Itr_sc000915.1_g00003.1 102 TMMKCIALGAVEFLQKPLSDDKLRN 126
                              **********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521723.42E-1416134IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23009.0E-1516152No hitNo description
PROSITE profilePS5011020.27619132IPR001789Signal transduction response regulator, receiver domain
PfamPF000726.1E-820127IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.48E-821131No hitNo description
Gene3DG3DSA:1.10.10.605.7E-27309369IPR009057Homeodomain-like
PROSITE profilePS5129415.841309368IPR017930Myb domain
SuperFamilySSF466894.48E-18310368IPR009057Homeodomain-like
TIGRFAMsTIGR015578.9E-25312366IPR006447Myb domain, plants
PfamPF002492.0E-8315364IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MVCTANDLLD WKDFPKGLRV LLLDEDPNSA AEMRSKLEEM NYIVSTFQKE NEALLAISNK  60
SEAFHVAIIE VKTGNSDEAF KFLETAKDLP TIMTSNIDCL NTMMKCIALG AVEFLQKPLS  120
DDKLRNIWQH VVHKAFNAGE KDVSESLKPV KESIVSMLQL ESRNSGADAQ NSNETIRENS  180
QEFSADSDKY PAPSTPQLKQ GARSLDDCEC LDQTNFLMER DSVEQDEESK SVETTCCNSV  240
SSTNPAISPP VSLVEASIKG ECKSSPDHKS RTENSTSLQS TDAPLNVSNE SAAPNKLSRV  300
NSSSGTKVNK KKLKVDWTPE LHKKFVQAVE QLGVDAAIPS RILEVMKVEG LTRHNVASHL  360
QKYRMHRRQI LPKDDAKRWP NPRDSTQRSC FPRDPILAFP PYHSPYSIPS DQYYPAWVQP  420
GSYPSGVQMW GSPYHYPGWQ STDNWHWKPH PGAHANAWGC PVMPSPQGSY PTYPQNASGY  480
YRADGVQNRY HMLEKSFDFQ PAEEVIDKVV KEAINKPWLP LPLGLKPPST ECVLNELLKQ  540
GISTIPHKIN GSHTR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A3e-16317366655Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019190934.10.0PREDICTED: two-component response regulator-like APRR2 isoform X1
RefseqXP_019190936.10.0PREDICTED: two-component response regulator-like APRR2 isoform X1
RefseqXP_019190937.10.0PREDICTED: two-component response regulator-like APRR2 isoform X1
RefseqXP_019190938.10.0PREDICTED: two-component response regulator-like APRR2 isoform X1
SwissprotQ6LA431e-144APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A1U7XCN50.0A0A1U7XCN5_NICSY; two-component response regulator-like APRR2 isoform X2
STRINGXP_009784214.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56731531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-148ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]