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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000904.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 169aa MW: 19308.7 Da PI: 8.4813 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.5 | 2.6e-19 | 19 | 70 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++t++q++ Le F+ n++++ +++ +LA++lgL+ rqV +W+qN+Ra++k Itr_sc000904.1_g00004.1 19 KRLTQDQVRLLEISFKANSKLDPDRKSQLAQELGLPPRQVAIWYQNKRARWK 70 579************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 111.7 | 4.7e-36 | 18 | 108 | 3 | 93 |
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +rl+++qv+lLE sF++++kL+p+rK++la+eLgl prqva+W+qn+RAR+k++ lE+d++a+++++ ++++nerL kev++Lr Itr_sc000904.1_g00004.1 18 NKRLTQDQVRLLEISFKANSKLDPDRKSQLAQELGLPPRQVAIWYQNKRARWKSQSLEVDHKAMQQRLSGVVADNERLGKEVQRLR 103 69************************************************************************************ PP HD-ZIP_I/II 89 eelke 93 eel++ Itr_sc000904.1_g00004.1 104 EELSR 108 *9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 2.3E-17 | 15 | 76 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.96E-17 | 17 | 79 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.8E-16 | 19 | 70 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.18E-15 | 20 | 73 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.2E-20 | 20 | 79 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.467 | 20 | 72 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 5.4E-6 | 43 | 52 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 47 | 70 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 5.4E-6 | 52 | 68 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MDYFNSQQAR KSLLKCHNKR LTQDQVRLLE ISFKANSKLD PDRKSQLAQE LGLPPRQVAI 60 WYQNKRARWK SQSLEVDHKA MQQRLSGVVA DNERLGKEVQ RLREELSRTQ EMLFSLNAAA 120 YSSLSSSGDE VGSCSDLLHD SKELYACLID DHEGQIGKSA DAHNFFRLA |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019169031.1 | 1e-101 | PREDICTED: homeobox-leucine zipper protein ATHB-52-like | ||||
TrEMBL | A0A1J6IZQ9 | 6e-72 | A0A1J6IZQ9_NICAT; Homeobox-leucine zipper protein athb-52 | ||||
TrEMBL | A0A2G2XF04 | 7e-72 | A0A2G2XF04_CAPBA; Uncharacterized protein | ||||
TrEMBL | A0A2G3D5C9 | 7e-72 | A0A2G3D5C9_CAPCH; Uncharacterized protein | ||||
STRING | XP_009800499.1 | 2e-72 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2715 | 24 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53980.1 | 2e-29 | homeobox protein 52 |