PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Itr_sc000887.1_g00016.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C3H

Protein Properties

Length: 371aa MW: 41565.2 Da PI: 6.722

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000887.1_g00016.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.9	1.3e-06	131	151	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f++ G C+ Gd C FaHg Itr_sc000887.1_g00016.1 131 ACPDFRK-GNCRKGDACEFAHG 151 7****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	6.2E-6	126	152	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.779	127	153	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.6E-4	131	153	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.6E-5	131	151	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	5.5	161	184	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	7.648	161	185	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MMIGERDHSY LAAQVTTWYS GDHTANIQFS SSPRDNAYAG EEFSPSIQND AALRAFQRYL 60 PSNSSDGEFD GGKDGEFPAD AYSCDQFRMY EFKVRKCARG RSHDWTECPF AHPGEKARRR 120 DPRACHYSGT ACPDFRKGNC RKGDACEFAH GVFECWLHPA RYRTQPCKDG LNCKRRVCFF 180 AHSPEQLRVL SPRYESYDGS PQRFGFDAAK TIHFVSSPES GSPPSESPPL SPMTAANSVN 240 SLSRSLGSNY VSDMVASLRQ LQLNKVKSMP SSWTVQIGSP VHGSPVLPVT RPGFRSLPST 300 PTQCIPRSHF DLWEESLREE EDEIPMERVE SGRGLRARMF QKLSEENPLD GYPNPSDAPN 360 PDVGWVSDLI N

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MMIGERDHSY LAAQVTTWYS GDHTANIQFS SSPRDNAYAG EEFSPSIQND AALRAFQRYL  60
PSNSSDGEFD GGKDGEFPAD AYSCDQFRMY EFKVRKCARG RSHDWTECPF AHPGEKARRR  120
DPRACHYSGT ACPDFRKGNC RKGDACEFAH GVFECWLHPA RYRTQPCKDG LNCKRRVCFF  180
AHSPEQLRVL SPRYESYDGS PQRFGFDAAK TIHFVSSPES GSPPSESPPL SPMTAANSVN  240
SLSRSLGSNY VSDMVASLRQ LQLNKVKSMP SSWTVQIGSP VHGSPVLPVT RPGFRSLPST  300
PTQCIPRSHF DLWEESLREE EDEIPMERVE SGRGLRARMF QKLSEENPLD GYPNPSDAPN  360
PDVGWVSDLI N

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019192664.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 20-like
Swissprot	Q9M0G2	1e-114	C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBL	A0A1S3Y1A1	0.0	A0A1S3Y1A1_TOBAC; zinc finger CCCH domain-containing protein 20-like
STRING	XP_009608132.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1857	21	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29190.1	1e-106	C3H family protein

Publications ? help Back to Top
Dokládal L, et al. cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase. Front Plant Sci, 2015. 6: p. 985 [PMID:26617625] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]