PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Function |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Itr_sc000886.1_g00005.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB_related

Protein Properties

Length: 90aa MW: 10353.7 Da PI: 9.6889

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000886.1_g00005.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.7	1.3e-08	7	53	1	44
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 r +WT+ +l+ +a + + ++ +W +ar +g g+++ ++k ++ Itr_sc000886.1_g00005.1 7 RSSWTPRQNKLFEKALATFDKDtpdRWQNVARAVGGGKSADDVKRHY 53 789*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	9.289	5	61	IPR017884	SANT domain
SMART	SM00717	2.1E-7	6	59	IPR001005	SANT/Myb domain
Pfam	PF00249	2.1E-6	7	53	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	4.6E-12	8	64	IPR009057	Homeodomain-like
CDD	cd00167	6.77E-5	9	57	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 90 aa Download sequence Send to blast
MASSSFRSSW TPRQNKLFEK ALATFDKDTP DRWQNVARAV GGGKSADDVK RHYEILLEDL 60 RRIESGDVPL PAYKTTADDE QRLLRFLKLQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	2e-27	10	90	11	93	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019165805.1	3e-59	PREDICTED: protein RADIALIS-like 4
Swissprot	Q1A173	1e-29	RADL6_ARATH; Protein RADIALIS-like 6
TrEMBL	A0A1S4A285	1e-45	A0A1S4A285_TOBAC; protein RADIALIS-like 4
TrEMBL	A0A1U7WY03	1e-45	A0A1U7WY03_NICSY; protein RADIALIS-like 4
STRING	XP_009779120.1	2e-46	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA202	24	231

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75250.1	3e-32	RAD-like 6