PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000852.1_g00006.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ARR-B
Protein Properties Length: 693aa    MW: 75956.7 Da    PI: 5.9918
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000852.1_g00006.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like26.91e-08198219122
                  G2-like   1 kprlrWtpeLHerFveaveqLG 22 
                              kpr++W+ eLH++Fv av++LG
  Itr_sc000852.1_g00006.1 198 KPRVVWSAELHRKFVAAVNHLG 219
                              79*******************6 PP
2G2-like46.58.4e-152512842055
                  G2-like  20 qLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                              +L  + +A+Pk+il++m+v+gL++e+v+SHLQkYRl
  Itr_sc000852.1_g00006.1 251 SL--NAEAVPKRILDMMNVEGLSRENVASHLQKYRL 284
                              55..678****************************8 PP
3Response_reg78.42.6e-26251331109
                              EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHH CS
             Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeee 84 
                              vl vdD+p+ ++ll+ +l++ +y +v+++ +++ ale+l+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++a+++ +
  Itr_sc000852.1_g00006.1  25 VLAVDDDPICLKLLECLLRRCQY-HVTVTNQATTALEMLRENKdrFDLVISDVYMPDMDGFKLLELVGL-EMDLPVIMLSANSDTS 108
                              799********************.***************888889*******************87754.558************* PP

                              HHHHHHHTTESEEEESS--HHHHHH CS
             Response_reg  85 dalealkaGakdflsKpfdpeelvk 109
                              ++ + +  Ga d+l+Kp+ +eel++
  Itr_sc000852.1_g00006.1 109 LVMKGVTHGACDYLVKPVRIEELRN 133
                              ***********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521729.25E-3622146IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23003.7E-4222160No hitNo description
SMARTSM004483.0E-3223135IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.6224139IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.5E-2325134IPR001789Signal transduction response regulator, receiver domain
CDDcd001567.20E-2726139No hitNo description
SuperFamilySSF466898.06E-14195223IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.1E-26195222IPR009057Homeodomain-like
TIGRFAMsTIGR015574.1E-12254284IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.608.1E-26256289IPR009057Homeodomain-like
SuperFamilySSF466898.06E-14257288IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    Send to blast
MTVDESRRRV EKENNSDNFP VGMRVLAVDD DPICLKLLEC LLRRCQYHVT VTNQATTALE  60
MLRENKDRFD LVISDVYMPD MDGFKLLELV GLEMDLPVIM LSANSDTSLV MKGVTHGACD  120
YLVKPVRIEE LRNIWQHVIR RKTFDSKHHS KSGDQDNEEE GRQGDQLSGT AEQNEKLNKR  180
RKDEEDGSEN EDPATQKKPR VVWSAELHRK FVAAVNHLGI ESELFSTNAY RSTSISVFGT  240
SPFRVIHHLR SLNAEAVPKR ILDMMNVEGL SRENVASHLQ KYRLYLKRIS LVSTPQANMA  300
TPYMPMGSLG GFGDLQTLAG PGQLNRATLS PYVPGSLLGR LNSSAGVSLQ NRNLLGLLQP  360
SHAQSSGNSL DLLGKLNANA PPTSQNPSLF RGIPSLELDQ LQHGKFPKIE QVLNPMDNSK  420
LLTSASTFTG SGSAFGNPIN ATIQQGQTGE GFGNPHSLNM ASLRPEPLNT GVSSASNFLG  480
HGGLNGNLGN SILASNVQPN CYPLMETFTH SQLDQNHVRG GNYSPAGPHL QSSPLGYNST  540
FSTSIPYENS RGQTQYQEGF IGDAIQSVNH APTQFWGDHN SNSNNVFSNS SSQILGNGLM  600
PPLSQIADQN NDIFNMKTDT PLIGQENGGS VVLFPHNENA NFNQDSRMGS NEDYMLNSAK  660
PQGAYSSLDD LMNGVIKGEQ SGQFGFDDYL FGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3nhz_A3e-13241307111Two component system transcriptional regulator mtrA
3nhz_B3e-13241307111Two component system transcriptional regulator mtrA
3nhz_C3e-13241307111Two component system transcriptional regulator mtrA
3nhz_D3e-13241307111Two component system transcriptional regulator mtrA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019197965.10.0PREDICTED: two-component response regulator ARR12-like
SwissprotA2X1N21e-114ORR24_ORYSI; Two-component response regulator ORR24
SwissprotQ6H8051e-114ORR24_ORYSJ; Two-component response regulator ORR24
TrEMBLA0A1S4A6C40.0A0A1S4A6C4_TOBAC; Two-component response regulator
TrEMBLA0A1U7V6D80.0A0A1U7V6D8_NICSY; Two-component response regulator
STRINGXP_009757804.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22582458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-99response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]