PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000844.1_g00007.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family B3
Protein Properties Length: 531aa    MW: 59955.4 Da    PI: 6.8372
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000844.1_g00007.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.51.6e-20136228199
                              EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                              f+k l++s+v++  ++ +p +f+++h +   +++tl+le+esg++++vk+  +k++    l++GW++Fv a+ L egD+++F+l++
  Itr_sc000844.1_g00007.1 136 FLKLLVRSHVGSCFWMGFPVPFCKKHLSR--TDTTLVLENESGEEFSVKYLAQKTG----LSAGWRKFVAAHTLLEGDVLIFQLVS 215
                              89************************655..6779***************444444....*************************9 PP

                              SSEE..EEEEE-S CS
                       B3  87 rsefelvvkvfrk 99 
                              +++ ++v +v+++
  Itr_sc000844.1_g00007.1 216 TERLKPVYRVVSR 228
                              9*****9999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-17128219IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-19131219IPR015300DNA-binding pseudobarrel domain
CDDcd100176.45E-20134217No hitNo description
PfamPF023623.6E-18136228IPR003340B3 DNA binding domain
PROSITE profilePS5086312.492136229IPR003340B3 DNA binding domain
SMARTSM010192.1E-19136229IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MKLKVVLNQE NLGDLDVPKE EIMEEEEAGR PGNEGNLILA TLPISEDPPA PSPGKRKRKA  60
KGVMDEFSPL LFIRKRKKMP RPPGSQFNHE VDDYKGKSPG TANSRFRSSS ALQVKSPTLI  120
CAEEVQSSLG QEHPTFLKLL VRSHVGSCFW MGFPVPFCKK HLSRTDTTLV LENESGEEFS  180
VKYLAQKTGL SAGWRKFVAA HTLLEGDVLI FQLVSTERLK PVYRVVSRSH VNNTPRLWSV  240
EDENYYHEKL IHPDGAMPDF MGLRSQMLFF LDMYRYFSYH TGFDVYVIRA NDLTEVDGAL  300
SLLNLEVLTK QSNAVEGATC NNKRRKHPKS LPLTAVEKGS TKQLALLEQQ SGNDSDGVAS  360
EVLEDSKSSQ LAVSFGDIKN FEDFTIVINN QRIDSGIPEH IRRKYYELCR SKNAFLHECL  420
LPGLCCELVI GVIFELVSIA DAIRTCKLTT TIKEFEKWDK SLRSFELLGM KTGYREAKAG  480
QSRTEDEIRN LELKLAALKE TSEKYGADAE ALKLKAESHE EKFREEVEAP W
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15677KRKAKGVMDEFSPLLFIRKRKK
27377RKRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019182814.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like
TrEMBLA0A068U4F21e-141A0A068U4F2_COFCA; Uncharacterized protein
TrEMBLA0A314KNS61e-142A0A314KNS6_NICAT; B3 domain-containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72042328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-29B3 family protein