PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000830.1_g00007.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C3H
Protein Properties Length: 685aa    MW: 75177.7 Da    PI: 6.2924
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000830.1_g00007.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.11.3e-07178198526
                              --SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                              +C+ffa+ G+C  G++C+F H+
  Itr_sc000830.1_g00007.1 178 ICDFFAK-GWCIKGSSCRFLHV 198
                              6******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0056173199IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.009173200IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-6173197IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-5178198IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MRVVIGYVGG CRGIWIGGWV DDMKNRQVLE PARLEKLLGS DSATPQESVA HPPLDASVVR  60
DSDDNNETAS PNDTNEGKKS TVDGNKTHRG DANISLHGGG VMPEKAFGCE INAAMLDVDP  120
SSNGIMGVQY SKDMADQEAA QAVEDMEISP RSDVPQLRPR SLSPGAEFND KNKRPAIICD  180
FFAKGWCIKG SSCRFLHVRD NAANSSKEGS VDASKGKGIL AGEGLKYTTE ISAKNMHSDL  240
GLSRIEHEAT LRLKSGIEEV PLDKNLPVSD TSFKDKDIGR EYLEHKPYLA NYNHSSSMFK  300
DYSQTFGNSS FGRGLPSENC RNVGYSSYFS HLEGIRSKGS QFLHDDHPSN CPAERVPLYP  360
SASWNASPLG LQKPIEGGKE LSASGSVSFK HKSPPFTGSE STLISHPDLS APTHHSSLYR  420
PKLSFDNWEP SVPFQPSFLI TQRMLSEASQ YDPIRDSIEQ TVAQDKPSQF PFSGQGASVS  480
GTHVCENADP VVTGNLGPEQ SSNKHSVSSH SSHKDAVPRN LSEKEKELMD TAGVHQENIY  540
YTSLKEKQLL KSADFGDTTE ADKTHFSNDT LQKNGAQCKM ELKVERVESG NDVDGLVHQD  600
SRALKQFRSA LVEFIKELLK PTWQEGLLSR DAYKVIVKKT AAKFLSTMQP EQIPDNSDSS  660
KEYLSFVQPK LEKLVLGNVD KYGRS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019175663.10.0PREDICTED: protein FRIGIDA-ESSENTIAL 1 isoform X1
TrEMBLA0A484LPP60.0A0A484LPP6_9ASTE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30042122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.12e-38C3H family protein