PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000829.1_g00003.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 877aa    MW: 96024.6 Da    PI: 5.9794
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000829.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.13e-182683457
                             -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                 Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                               ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Itr_sc000829.1_g00003.1 26 YVRYTAEQVEALERVYAECPKPSSLRRQQLIRECpilaNIEPKQIKVWFQNRRCREKQ 83
                             5789****************************************************97 PP
2START159.32.9e-501944012204
                              HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECT CS
                    START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetleviss 87 
                              +aee+++e+++ka+ ++  Wv+++ +++g++++ +f+ s+++sg a+ra+g+v  ++    +e+l+d+++W +++++ e+      
  Itr_sc000829.1_g00003.1 194 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISHSCSGVAARACGLVSLEPI-KIAEILKDRPCWFRDCRSLEVFTMFPA 278
                              7899******************************************************.7777777777***********999999 PP

                              T..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEE CS
                    START  88 g..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwv 167
                              g  g+++l +++ +a+++l+p Rdf+++Ry+ +l+ g+ vi+++S++ +   p+    s++vRae+lpSg+li+p+++g+s +++v
  Itr_sc000829.1_g00003.1 279 GngGTIELLYTQIYAPTTLAPaRDFWTLRYTTTLENGSVVICERSLSGTGAGPNataASQFVRAETLPSGYLIRPCEGGGSIIHIV 364
                              999***********************************************99999999**************************** PP

                              E-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
                    START 168 ehvdlkgrlphwllrslvksglaegaktwvatlqrqc 204
                              +h +l++++++++lr+l++s+ + ++k++ a+l++ +
  Itr_sc000829.1_g00003.1 365 DHLNLEAWSVPEVLRPLYESSKVVAQKMTIAALRYIR 401
                              ********************************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.1432084IPR001356Homeobox domain
SMARTSM003893.8E-152288IPR001356Homeobox domain
CDDcd000865.11E-162585No hitNo description
SuperFamilySSF466895.99E-162586IPR009057Homeodomain-like
PfamPF000467.9E-162683IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.0E-182783IPR009057Homeodomain-like
CDDcd146861.59E-577116No hitNo description
PROSITE profilePS5084826.417184412IPR002913START domain
CDDcd088751.97E-70188404No hitNo description
SMARTSM002343.3E-40193403IPR002913START domain
SuperFamilySSF559616.32E-34193405No hitNo description
Gene3DG3DSA:3.30.530.206.4E-18193393IPR023393START-like domain
PfamPF018528.0E-48194401IPR002913START domain
PfamPF086706.0E-46729876IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010014Biological Processmeristem initiation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 877 aa     Download sequence    Send to blast
MALVAQHHRE SSSGSIDRGH LDAGKYVRYT AEQVEALERV YAECPKPSSL RRQQLIRECP  60
ILANIEPKQI KVWFQNRRCR EKQRKESSRL QGVNRKLSAL NKLLMEENDR LQKQVSQLVC  120
ENGYMRQQLQ TVSRKCVLSS VDGNSSFAFP PDVFSPANGL LQAPATTDGS CESAVTTSQH  180
SLRDANNPAG LLSIAEETLA EFLSKATGTA VDWVQMPGMK PGPDSVGIFA ISHSCSGVAA  240
RACGLVSLEP IKIAEILKDR PCWFRDCRSL EVFTMFPAGN GGTIELLYTQ IYAPTTLAPA  300
RDFWTLRYTT TLENGSVVIC ERSLSGTGAG PNATAASQFV RAETLPSGYL IRPCEGGGSI  360
IHIVDHLNLE AWSVPEVLRP LYESSKVVAQ KMTIAALRYI RQIAQETSGE VVYGLGRQPA  420
VLRTFSQRLS RGFNDAINGF NDDGWSVLSC DGAEDVTVAI NSTKNFGTSN TLQMLGGILC  480
AKASMLLQNV PPAVLVRFLR EHRSEWADFN VDAYFAAALK SSSYAYPGMR PTRFTGSQII  540
MPLGQTIEHE EMLEVIRLEG HALDNEDAFL SRDIHLLQMC SGIDENAVGA CSELVFAPID  600
EMFPDDALLI PSGFRIIPLE SKSVKNDVQD ALPAQRTLDL TSSLEVGLAT TNHAVGSVST  660
SYTARSVLTI AFQFPFENNL QDNVATMARQ YVRSVISSVQ RVAMAISPSG SGPSLGPKLS  720
AISPEALPLA QWICQSYSYH MGVELLGGDS MGGESVLKNL WNHHDAILCC SVKDLLARSL  780
PVFIFANKAG LDMLETTLVG LQDIALDKIF DDSGRKALYS EFAKIMQQGY AYMPGGICMS  840
AMGRHVSYEQ AIAWKVLLDD ENTMHCLAFS FINWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019166562.10.0PREDICTED: homeobox-leucine zipper protein REVOLUTA-like
RefseqXP_019166563.10.0PREDICTED: homeobox-leucine zipper protein REVOLUTA-like
SwissprotQ9SE430.0REV_ARATH; Homeobox-leucine zipper protein REVOLUTA
TrEMBLA0A484NU790.0A0A484NU79_9ASTE; Uncharacterized protein
STRINGVIT_06s0004g02800.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Lian H,Li X,Liu Z,He Y
    HYL1 is required for establishment of stamen architecture with four microsporangia in Arabidopsis.
    J. Exp. Bot., 2013. 64(11): p. 3397-410
    [PMID:23918970]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  5. Roodbarkelari F,Du F,Truernit E,Laux T
    ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response.
    BMC Biol., 2015. 13: p. 74
    [PMID:26358077]
  6. Shi B, et al.
    Two-Step Regulation of a Meristematic Cell Population Acting in Shoot Branching in Arabidopsis.
    PLoS Genet., 2016. 12(7): p. e1006168
    [PMID:27398935]