PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Itr_sc000828.1_g00008.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Protein Properties

Length: 251aa MW: 27905.1 Da PI: 6.3724

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000828.1_g00008.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	42.4	1.3e-13	143	244	1	99
EEEE-..-H.HHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsd.vlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvv 81 f+kvl+ d lk++rl +pk++ae++ ++ + ++ +++ d++g++We+ ++ + +s++yvl+ G +++ a++ ++gD+v+ Itr_sc000828.1_g00008.1 143 FEKVLSATDtDLKLSRLFIPKTHAETFfpDLCGRHGMPISILDTEGKQWEFFIRCwpNPSSKTYVLE-GLRDYIIAKKWQAGDIVT 227 67777655515677********999444456788*************87355556669999.************** PP EEE-SS.SEE..EEEEE-S CS B3 82 Fkldgr.sefelvvkvfrk 99 F ++ +++l+++++++ Itr_sc000828.1_g00008.1 228 FC--QTkPGGKLMMGLRKT 244 ..454999999999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.9E-21	138	245	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	6.67E-17	140	244	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.68E-18	141	243	No hit	No description
SMART	SM01019	2.1E-9	143	245	IPR003340	B3 DNA binding domain
Pfam	PF02362	9.9E-10	143	243	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	9.305	144	245	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MIQIEAVLMT TGHSCSLDCC AGVSSAYDEG KFCETFHSND DGWRDCEGCG KLVHCGCIVS 60 FNTYLLLDFG GIMCMECSKI SFILEHFLFL QAYPPNSARN CCMYPASPLP FDDPQQDPSR 120 KNQKESQYCP HAIGPGSIVT PLFEKVLSAT DTDLKLSRLF IPKTHAETFF PDLCGRHGMP 180 ISILDTEGKQ WEFFIRCWPN PSSKTYVLEG LRDYIIAKKW QAGDIVTFCQ TKPGGKLMMG 240 LRKTSTGSAS S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6fas_A	9e-30	139	247	5	112	B3 domain-containing transcription repressor VAL1
6fas_B	9e-30	139	247	5	112	B3 domain-containing transcription repressor VAL1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019183276.1	1e-162	PREDICTED: B3 domain-containing transcription factor VAL3-like isoform X1
Swissprot	Q6Z3U3	2e-27	Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBL	A0A2G9HK54	2e-87	A0A2G9HK54_9LAMI; Uncharacterized protein
STRING	Migut.H01903.1.p	1e-78	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12994	9	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	1e-29	HSI2-like 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]