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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Itr_sc000828.1_g00002.1 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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| Family |
NAC |
| Protein Properties |
Length: 322aa MW: 35746.3 Da PI: 7.6868 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Itr_sc000828.1_g00002.1 | genome | Kazusa | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 168.2 | 2.8e-52 | 14 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86
lppGfrF Ptdeel+v+yL+kkv+g++++l ++i e+d+yk++Pw Lp+k++ +ekewyfFs+rd+ky++g+r+nr++ sgyWkat
Itr_sc000828.1_g00002.1 14 LPPGFRFYPTDEELLVQYLCKKVAGHDFSL-RIIGEIDLYKFDPWVLPSKATFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKAT 98
79***************************9.89***************988899******************************** PP
NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
g+dk +++ +g++vg+kk Lvfy g+apkg+kt+W+mheyrl
Itr_sc000828.1_g00002.1 99 GTDKVITT-EGRKVGIKKALVFYVGKAPKGSKTNWIMHEYRL 139
******99.999****************************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 322 aa
Download sequence Send
to blast |
MGVKETDPLS QLSLPPGFRF YPTDEELLVQ YLCKKVAGHD FSLRIIGEID LYKFDPWVLP 60
SKATFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKVITTEGRK VGIKKALVFY 120
VGKAPKGSKT NWIMHEYRLS DAPKKTGSSR LDEWVLCRIY KKHSSAEKAI SGGVPTKEHS 180
HGSPSSTSSQ FDDMLVALPE LNDQSFVLPA MNNLKQEEQV DLHELGPMSF DWNTISAAQP 240
TLPDFSAGAG AGNQVSAVQV TGNGVNYQND VFAHAMAMNF QAPDDEVQSG LRSFFLPQSF 300
SNSPDPFGIR YPTQSPSMGF RP
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 1e-106 | 1 | 168 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 1e-106 | 1 | 168 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 1e-106 | 1 | 168 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 1e-106 | 1 | 168 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 1e-106 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
| 3swm_B | 1e-106 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
| 3swm_C | 1e-106 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
| 3swm_D | 1e-106 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
| 3swp_A | 1e-106 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
| 3swp_B | 1e-106 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
| 3swp_C | 1e-106 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
| 3swp_D | 1e-106 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
| 4dul_A | 1e-106 | 1 | 168 | 4 | 171 | NAC domain-containing protein 19 |
| 4dul_B | 1e-106 | 1 | 168 | 4 | 171 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419, ECO:0000269|PubMed:30610166}. |
