PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000821.1_g00026.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C3H
Protein Properties Length: 385aa    MW: 39457.4 Da    PI: 8.4633
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000821.1_g00026.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.45e-081181027
                             GGTS--TTTTT-SS-SSS CS
                  zf-CCCH 10 artGtCkyGdrCkFaHgp 27
                             +rtG Ck+G++Ck++H++
  Itr_sc000821.1_g00026.1  1 MRTGMCKFGASCKYHHPR 18
                             8***************96 PP
2zf-CCCH35.31.9e-113963226
                             -S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                             ++++C+++ +tG+Ck+G +CkF+H+
  Itr_sc000821.1_g00026.1 39 GEKECSYYVKTGHCKFGVSCKFHHP 63
                             7899********************9 PP
3zf-CCCH38.42.1e-12210236127
                              --S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                              +++++C+++++tG+Ck+G++C+++H+p
  Itr_sc000821.1_g00026.1 210 PGQPECQHYMKTGECKFGSSCRYHHPP 236
                              5789*********************97 PP
4zf-CCCH37.15.2e-12258282327
                              S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                               ++C+++a++G+Ck+G++CkF H++
  Itr_sc000821.1_g00026.1 258 APICSHYAQNGICKFGPSCKFDHPM 282
                              589********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.291119IPR000571Zinc finger, CCCH-type
PfamPF006429.5E-5118IPR000571Zinc finger, CCCH-type
SMARTSM0035635118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.8593765IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-53764IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-63964IPR000571Zinc finger, CCCH-type
PfamPF006428.5E-93963IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-44362IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.699209237IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-6209236IPR000571Zinc finger, CCCH-type
PfamPF006429.8E-10211236IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-6213236IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-4215236IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-6252281IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.915255283IPR000571Zinc finger, CCCH-type
SMARTSM003569.8E-8255282IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-9258282IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-5260280IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MRTGMCKFGA SCKYHHPRQG GGSQAPVALN AYGYPLRPGE KECSYYVKTG HCKFGVSCKF  60
HHPLPVGEQM PLPPAGPGPL LPPTAVAAPG IFPTVQSPSV QSSQQYGVMP GNWPISRPGM  120
LPGSYIPGAY SPMLLPPGMV AVPGGWTPYP APVNPVASPS TQPAGPGPVY GLTQLAPSAP  180
TYSAGAYMSV GSSAGPSGGN QKEHAYPQRP GQPECQHYMK TGECKFGSSC RYHHPPEFSE  240
TKTNFLLSPM GLPLRPGAPI CSHYAQNGIC KFGPSCKFDH PMGALSYSPS ASSLADMPVA  300
PYPVGSSIGT LAPSSSSSDL RPELISGSGS EAFSTQTSSM STSSGAVGSI FSNTGPASHS  360
GVQPSGQSSS GSGSTGHGGE VHSSS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019181124.10.0PREDICTED: zinc finger CCCH domain-containing protein 34-like
SwissprotQ5NAW21e-116C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6
TrEMBLA0A3Q7EGL41e-178A0A3Q7EGL4_SOLLC; Uncharacterized protein
STRINGSolyc01g067550.2.11e-179(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24122459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-96C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Friedrichs G,Fikri M,Guo Y,Temps F
    Time-resolved cavity ringdown measurements and kinetic modeling of the pressure dependences of the recombination reactions of SiH2 with the alkenes C2H4, C3H6, and t-C4H8.
    J Phys Chem A, 2008. 112(25): p. 5636-46
    [PMID:18512897]
  3. Ning H,Gong C,Li Z,Li X
    Pressure-dependent kinetics of initial reactions in iso-octane pyrolysis.
    J Phys Chem A, 2015. 119(18): p. 4093-107
    [PMID:25868004]