PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000819.1_g00014.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family B3
Protein Properties Length: 722aa    MW: 79265.7 Da    PI: 5.0032
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000819.1_g00014.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.62.7e-19584671285
                              EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                       B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvF 82 
                              +kvl++sdv+++gr+vlpkk ae+   +++++ ++ + +ed  ++r+W++k+++  ++ks++y+l+ ++ +Fv+angL+egDf+v+
  Itr_sc000819.1_g00014.1 584 QKVLKQSDVGSLGRIVLPKKEAETQlpELESRDGISIAMEDiGTSRVWNMKYRFwpNNKSRMYLLE-NTGDFVRANGLQEGDFIVI 668
                              79********************999**999999********7778*******99777777777777.******************* PP

                              EE- CS
                       B3  83 kld 85 
                              + d
  Itr_sc000819.1_g00014.1 669 YAD 671
                              943 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-25577674IPR015300DNA-binding pseudobarrel domain
CDDcd100152.82E-30581671No hitNo description
SuperFamilySSF1019366.47E-21582670IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.6E-16583691IPR003340B3 DNA binding domain
PROSITE profilePS5086310.8583691IPR003340B3 DNA binding domain
PfamPF023621.3E-15584671IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 722 aa     Download sequence    Send to blast
MKREYDKDGD IQDLHATGGG GDVEAVTEEI YGGEGGDFDP MEIWLESVDE DQHLDVNDFP  60
PLPDFPCMSS SSSTSSVPAG VVKPSSSSSA SSSSSSAASW AVLKSDGEED PAAKKFHLHP  120
PQPAMTPSAS MDASGGGVPP PPEDSFTDDD CINVMENLGY MDFINGDDIW DPITIFQTEN  180
FPPPPPAAAA AFEGLQQQQE DDESKAAEAE TETADLSFLQ GNGELAAIFF DWLKQNKDYI  240
SAEDMRNIKL KRSTIESASK RLGSSKEGKK QLLKLILEWV QQYQLQKKNS REEAAAAAAA  300
ATADHQSTGA GHFQAETFLD TAPSCFFQSP WTPPPPPPQY IPDANNAAMM APPPPFPVFQ  360
PHAMGYSDPY NCGGASFSPM NVNGAHFPHP TEYHPPAAVD TAQSWQSSEF MAAAAPPFNP  420
FPDNDRIAAE SAQPQALYGS EYPYQLYDGN GERLVRLGSS ATKEARKKRM ARQRRLSSHH  480
FRHQNHHNNH HHQAQNYDPH HAMRMGVDTV LPHQVSNLGN WVYWSPAASE AQPPMVVLPP  540
AEAASQPHPV ERPPPAQQQN HQKQSSSDRR QGSKPEKNLK FLLQKVLKQS DVGSLGRIVL  600
PKKEAETQLP ELESRDGISI AMEDIGTSRV WNMKYRFWPN NKSRMYLLEN TGDFVRANGL  660
QEGDFIVIYA DMKFDSGSKS AAAWSKIRRQ ETGKEEPSHI VTGHLLTHQT SSELNGVLSS  720
AP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A4e-35579672194B3 domain-containing transcription factor FUS3
6j9b_D4e-35579672194B3 domain-containing transcription factor FUS3
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019165922.10.0PREDICTED: B3 domain-containing transcription factor ABI3
RefseqXP_019165928.10.0PREDICTED: B3 domain-containing transcription factor ABI3
RefseqXP_019165936.10.0PREDICTED: B3 domain-containing transcription factor ABI3
TrEMBLA0A1S3X1N10.0A0A1S3X1N1_TOBAC; B3 domain-containing transcription factor ABI3-like
STRINGXP_009792996.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42702339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.16e-69B3 family protein