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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000813.1_g00027.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | ZF-HD | ||||||||
Protein Properties | Length: 1103aa MW: 122598 Da PI: 8.1683 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 98.1 | 6.4e-31 | 800 | 853 | 3 | 57 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 +rY+eCl+NhA+s+Gg ++DGCgEfmp+ geegt+a+lkCaAC+CHRnFHR+e+ Itr_sc000813.1_g00027.1 800 VIRYRECLRNHAVSIGGSVTDGCGEFMPA-GEEGTVASLKCAACNCHRNFHRQET 853 689*************************9.999*******************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF56784 | 2.82E-61 | 225 | 411 | IPR023214 | HAD-like domain |
Pfam | PF05761 | 3.7E-70 | 227 | 410 | IPR008380 | HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase |
Gene3D | G3DSA:3.40.50.1000 | 1.9E-6 | 235 | 254 | IPR023214 | HAD-like domain |
SuperFamily | SSF56784 | 9.42E-73 | 440 | 754 | IPR023214 | HAD-like domain |
Pfam | PF05761 | 2.0E-91 | 440 | 753 | IPR008380 | HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase |
Gene3D | G3DSA:3.40.50.1000 | 1.9E-6 | 444 | 512 | IPR023214 | HAD-like domain |
Gene3D | G3DSA:3.40.50.1000 | 1.9E-6 | 561 | 615 | IPR023214 | HAD-like domain |
ProDom | PD125774 | 1.0E-21 | 796 | 852 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 4.1E-29 | 801 | 853 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.3E-28 | 802 | 852 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 25.643 | 803 | 852 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-25 | 1017 | 1087 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.02E-12 | 1019 | 1087 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.9E-26 | 1025 | 1083 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1103 aa Download sequence Send to blast |
MRLLRRVRSG VFSVKTPDTA RLPRHLVVSN NYSLGGSDLG GSISIFRVIL NHLAVEILIR 60 VQKWFAFKGN MRLAGERSVS FCLSGIPSLP PPDSLSFISR NLRFRVGPFR SRGTRIRYKG 120 ASLRLISSSK CLPLGDDFIH LLSILGALRG LVLLIEAYKL EHNSVLSVGF TLDPEGRNQL 180 HTRSAMDGIR LDGNTTQLEI DNGAFGDQRS CIWSSPGGCK IDIGKQIFCN RSLNMNNIVA 240 VGFDMDYTLA QYKPETFESL AYEGTVKKLV YDLGYPEELL QWSFDWSYMV RGLVVDKKRG 300 NILKMDRHKY VKVAYHGFRQ MSKGDKIATY GNTLIQDSFD EPDYVLIDTL FSLAGAYLFA 360 QLVDFKDNNP GRIPEESDYA CIYKDIHAAV DLCHRDGTLK QTVAQDPKRH FGTLNPWMIM 420 YLCSSQGFFS EERVLLSFLM HSYINDDTSI VPMLKMLRES GRATFLVTNS LWDYTNVVMN 480 FLCGPKSTDC HSTLTFEWLQ YFDVVITGSA KPGFFNEENR ANLFGVDPKT GMLMNTDNGT 540 PMAQVGSTSI RLPIESLTEG CRVFQGGSVG HLHKLLNIES SSQILYVGDH IYGDILRSKK 600 ALGWRTMLVV PELEREVELL WELKDTRKHL QSLRSERDHI EDDIDHLKWR LKSQGADDAE 660 KERLSSKLVE LQVGIFDSHR EQVRVVHKQT QRECHKKFHK VWGQLMKTGY QNSRFAHQVE 720 RFACLYTSQV TNLSLYSPDK YYRPSEDFMP HEFDILSLSR MGLIGEEKDI GDGGGFQAGV 780 DDAPPPLPEN QENSVAGTRV IRYRECLRNH AVSIGGSVTD GCGEFMPAGE EGTVASLKCA 840 ACNCHRNFHR QETPHGDGGA PPPPNPPALP SFASMTHRHN AWASLAAQSP KTFGGAPPPT 900 TAGAATAAPA TVASSFQEPN FNPHKCFTSA PFPSPATATA ATAAPVANSF QEPNFNPHKC 960 FTSAPFPSPA TAAAATAVPV PAAVDTSFQE SIFNPHKCFT SAPFPSPSTT AAATATAPAP 1020 ETRGKKRFRT KFTAEQKEKM TEFADKIGWR IPREEENING VERFCGEIGV KRQIFKVWMH 1080 NNKSSAKPNA TSPSQSSSSS INN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2bde_A | 3e-71 | 226 | 755 | 5 | 459 | cytosolic IMP-GMP specific 5'-nucleotidase |
4g63_A | 3e-71 | 226 | 755 | 5 | 459 | Cytosolic IMP-GMP specific 5'-nucleotidase |
4ohf_A | 3e-71 | 226 | 755 | 5 | 459 | Cytosolic IMP-GMP specific 5'-nucleotidase |
4ohf_B | 3e-71 | 226 | 755 | 5 | 459 | Cytosolic IMP-GMP specific 5'-nucleotidase |
4ohf_C | 3e-71 | 226 | 755 | 5 | 459 | Cytosolic IMP-GMP specific 5'-nucleotidase |
4ohf_D | 3e-71 | 226 | 755 | 5 | 459 | Cytosolic IMP-GMP specific 5'-nucleotidase |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU468239 | 2e-44 | CU468239.4 S.lycopersicum DNA sequence from clone SL_MboI-124K5 on chromosome 4, complete sequence. | |||
GenBank | HG975443 | 2e-44 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. | |||
GenBank | HG975516 | 2e-44 | HG975516.1 Solanum lycopersicum chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019156755.1 | 0.0 | PREDICTED: 5'-nucleotidase domain-containing protein 4-like isoform X1 | ||||
TrEMBL | A0A1J6JY68 | 0.0 | A0A1J6JY68_NICAT; Uncharacterized protein | ||||
STRING | XP_009760250.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75240.1 | 3e-25 | homeobox protein 33 |