PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000813.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family G2-like
Protein Properties Length: 643aa    MW: 72944.2 Da    PI: 8.4983
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000813.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like31.73.4e-10163215354
                  G2-like   3 rlrWtpeLHerFveaveqLGGse.kAtPktilelmkvkgLtlehvkSHLQkYR 54 
                              +++Wt+e   +F ++ve+L  +  + t  t+l  m+  g+t+e+v SHLQkYR
  Itr_sc000813.1_g00002.1 163 QMNWTKEHNFNFFSVVERLESEGrNVTATTVLSGMSGLGVTREQVNSHLQKYR 215
                              699****999*********76651568899*********************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.76E-6160219IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.0E-11162216IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-9163217IPR006447Myb domain, plants
SuperFamilySSF509161.23E-10346413IPR011039Transcription Factor IIF, Rap30/Rap74, interaction
PfamPF022706.6E-39347634IPR003196Transcription initiation factor IIF, beta subunit
SuperFamilySSF509161.23E-10450503IPR011039Transcription Factor IIF, Rap30/Rap74, interaction
Gene3DG3DSA:1.10.10.101.6E-30569636IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.99E-21569635IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006367Biological Processtranscription initiation from RNA polymerase II promoter
GO:0005674Cellular Componenttranscription factor TFIIF complex
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 643 aa     Download sequence    Send to blast
MEKVLVVNDG SINAGLLSLI KSKFEAQLVT GVEVWEKRSG IESHKRQCGS NLSKLEGSLC  60
AVSRGLASVF IEERNPSQAL ETLRMMSRGG VGGFDLVISY SHKRQRETTE LNTFIEREFP  120
QQLPIVCFKC IFEAMECFEG LNGMPARDLI HEWKSNTLLK ECQMNWTKEH NFNFFSVVER  180
LESEGRNVTA TTVLSGMSGL GVTREQVNSH LQKYRNFKRN RVVSSETSNK RNPKPRKNKL  240
ARHFEEYETI ELCRFYDKNS MDQAIPAQEI SNGFPMDISY NRSVHPEAWP EYSPFRSQQP  300
YVQNSDISVV KIGAKEKKIK QSDNTVEEEM EEDDGNVGDT AAAAAAVDTG KADRSVWLMK  360
CPLVVSKSWQ SQAAAASSSA DTPLVGKVVV SLDPLKPEES LQLPRPYGLV APGCTPYGRE  420
PTVVKETTFS YLVQPNYLFS MEMAGNDAGN IPKGYSLNMF KDFVPMCIFS ESNQVKVLSL  480
IRYFTAKVAM EGRIEHKFDM KPHTRNMEEY RKMCRERTNK SMIKNRQIQI IDNDRGVHMR  540
SMPGMLGLIA SGSKEKKKAT PVKGPEVKRT RRDRGELEDI MFKLFERQPN WTLKQLVQET  600
DQPAQFLKEI LNELCVYNKR GANQGTYELK PEYKKSAEDT GAD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4v1n_R3e-1334763959292TRANSCRIPTION INITIATION FACTOR IIF SUBUNIT BETA
4v1o_R3e-1334763959292TRANSCRIPTION INITIATION FACTOR IIF SUBUNIT BETA