PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Itr_sc000813.1_g00001.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

SRS

Protein Properties

Length: 355aa MW: 37613.1 Da PI: 8.0283

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000813.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	219.3	8.3e-68	141	288	5	154
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstk 90 +++CqdCGnqakkdC+h RCRtCCksrgf+C thvkstWvpaakrrerqqq+ + +++ ++ + ++++++++ +++s l++t+ Itr_sc000813.1_g00001.1 141 GVNCQDCGNQAKKDCSHLRCRTCCKSRGFQCPTHVKSTWVPAAKRRERQQQQIFSLHQHHSQPLSFRPENPKRQ-RDSSSPLACTR 225 679*******************************************99998887777777656566665553.56788999999 PP DUF702 91 lssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +++++s e+ + +P+ev+s+avfrcv+vs++dd+ +++aYqtavsigGhvfkGiLydqG+e+ Itr_sc000813.1_g00001.1 226 ITTTSSGLEVGGH-YPAEVNSPAVFRCVKVSAMDDEVDQYAYQTAVSIGGHVFKGILYDQGPET 288 9999888777665.**********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	6.1E-64	141	287	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.1E-26	143	185	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.9E-26	238	286	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MSSFFSLGGG GGGGGSGKDN QDHPELGGGN SNNNSNSNLF LFKNNNEEIY NKGFELWQQY 60 YHMHHHHHHH HQQQRVQQQQ QMVDFGVGVG PSGHGGGGGG GGSSSSSGGN LVGSDEQNPG 120 PSFRVMRQGG EGGGGGGGGA GVNCQDCGNQ AKKDCSHLRC RTCCKSRGFQ CPTHVKSTWV 180 PAAKRRERQQ QQIFSLHQHH SQPLSFRPEN PKRQRDSSSP LACTRITTTS SGLEVGGHYP 240 AEVNSPAVFR CVKVSAMDDE VDQYAYQTAV SIGGHVFKGI LYDQGPETRY PSAGGAHESS 300 SGTQQQPLNL IAGGGGASTS HQQAAAVATM IDPSLYPTPL SAFMAGTQFF PPPRP

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MSSFFSLGGG GGGGGSGKDN QDHPELGGGN SNNNSNSNLF LFKNNNEEIY NKGFELWQQY  60
YHMHHHHHHH HQQQRVQQQQ QMVDFGVGVG PSGHGGGGGG GGSSSSSGGN LVGSDEQNPG  120
PSFRVMRQGG EGGGGGGGGA GVNCQDCGNQ AKKDCSHLRC RTCCKSRGFQ CPTHVKSTWV  180
PAAKRRERQQ QQIFSLHQHH SQPLSFRPEN PKRQRDSSSP LACTRITTTS SGLEVGGHYP  240
AEVNSPAVFR CVKVSAMDDE VDQYAYQTAV SIGGHVFKGI LYDQGPETRY PSAGGAHESS  300
SGTQQQPLNL IAGGGGASTS HQQAAAVATM IDPSLYPTPL SAFMAGTQFF PPPRP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	91	102	SGHGGGGGGGGS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019155936.1	1e-156	PREDICTED: protein SHI RELATED SEQUENCE 1-like, partial
TrEMBL	A0A1S4BBZ4	1e-105	A0A1S4BBZ4_TOBAC; protein SHI RELATED SEQUENCE 1-like isoform X1
TrEMBL	A0A328DRT0	1e-105	A0A328DRT0_9ASTE; Uncharacterized protein
STRING	XP_009599252.1	1e-108	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA678	24	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	8e-72	Lateral root primordium (LRP) protein-related