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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Itr_sc000807.1_g00004.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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| Family |
HD-ZIP |
| Protein Properties |
Length: 295aa MW: 33240.9 Da PI: 6.8015 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Itr_sc000807.1_g00004.1 | genome | Kazusa | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 55.1 | 1.3e-17 | 84 | 137 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa+ k
Itr_sc000807.1_g00004.1 84 KKRRLSLEQVKALEKSFEVGNKLEPERKMQLARALGLQPRQIAIWFQNRRARSK 137
4558999*********************************************99 PP
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| 2 | HD-ZIP_I/II | 128.1 | 3.7e-41 | 83 | 174 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86
ekkrrls eqvk+LE+sFe +kLeperK++lar+Lglqprq+a+WFqnrRAR ktkqlEkdye Lkr+++al+++n++L++++++
Itr_sc000807.1_g00004.1 83 EKKRRLSLEQVKALEKSFEVGNKLEPERKMQLARALGLQPRQIAIWFQNRRARSKTKQLEKDYELLKRQFEALSADNDALKSQNKK 168
69************************************************************************************ PP
HD-ZIP_I/II 87 Lreelk 92
L++el+
Itr_sc000807.1_g00004.1 169 LHSELQ 174
**9997 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 295 aa
Download sequence Send
to blast |
MAAFVPPLPP PPETSITFQN PEEENHFSHH HHHDFNGAAN VSTLLMRRSV SFTGLERPWE 60
NQHHHHHQVD DDTSDDGCSQ LGEKKRRLSL EQVKALEKSF EVGNKLEPER KMQLARALGL 120
QPRQIAIWFQ NRRARSKTKQ LEKDYELLKR QFEALSADND ALKSQNKKLH SELQLMALRS 180
RESKGSGPGS AMIINLNKET EGSWNNNNNN NVSENNSIID VNLGSATTTA DSPLYSNKHH 240
HVLPPSSIAQ TNLPPHHHVQ DEGYCNMFGS AMDEQAEFLA MAPASTTFPL SFSFS
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| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 131 | 139 | RRARSKTKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}. |
| Publications
? help Back to Top |
- Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Ribone PA,Capella M,Chan RL
Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
J. Exp. Bot., 2015. 66(19): p. 5929-43
[PMID:26136262] - Wang X, et al.
Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
Sci China Life Sci, 2018. 61(1): p. 79-87
[PMID:28887625] - Ebrahimian-Motlagh S, et al.
JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
Front Plant Sci, 2017. 8: p. 2118
[PMID:29326734]
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