PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000806.1_g00001.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Trihelix

Protein Properties

Length: 393aa MW: 42914.6 Da PI: 10.1128

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000806.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	44.5	4.2e-14	74	161	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergfer...spkqCkekwenlnkrykkikegekkrtsessstcpyf 82 +W++ + +Liea e+ +l+rg+lk+++W++v++ + +++ +++ + +qCk++++ ++k+yk +k+ + + s++ +f Itr_sc000806.1_g00001.1 74 CWSEGATAVLIEAWGERYLELSRGNLKQQHWKDVADIVaSREDYSKppkTDIQCKNRIDTVKKKYKLEKAKIAAG--QGPSRWTFF 157 7*********************************99766677662226679****************98..45567 PP trihelix 83 dqle 86 d+l+ Itr_sc000806.1_g00001.1 158 DRLD 161 98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.4E-24	72	163	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0010431	Biological Process	seed maturation

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence Send to blast
MEDDEDVQSQ PSEGTGSPAS PRSNGRITVT VAAVPPPQNT NTLTLALPIQ QQSKTSGGGG 60 GGGGAGGGGG REDCWSEGAT AVLIEAWGER YLELSRGNLK QQHWKDVADI VASREDYSKP 120 PKTDIQCKNR IDTVKKKYKL EKAKIAAGQG PSRWTFFDRL DELIGPTAKG NNTSGSGGFA 180 GPSASNQKVP MGIPMGARSA PQLRQHQPPV QMQQKNKQAF RRRPPIDSDS SESEPEPSPD 240 STDSSPPPTY EKKRPRIQQR ELMMNSSVVR HTMPRGRDGG ATPAAAAASG SERDRNWANS 300 VRELTRAILK FGEAYEQAEN AKLQQMVEME KQRMKFAKEL ELQKMQVFMK TQLELSQLKN 360 RRVGSSNHHN NNTTTTATNN NNNNNNTNSF SSN

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence Send to blast

MEDDEDVQSQ PSEGTGSPAS PRSNGRITVT VAAVPPPQNT NTLTLALPIQ QQSKTSGGGG  60
GGGGAGGGGG REDCWSEGAT AVLIEAWGER YLELSRGNLK QQHWKDVADI VASREDYSKP  120
PKTDIQCKNR IDTVKKKYKL EKAKIAAGQG PSRWTFFDRL DELIGPTAKG NNTSGSGGFA  180
GPSASNQKVP MGIPMGARSA PQLRQHQPPV QMQQKNKQAF RRRPPIDSDS SESEPEPSPD  240
STDSSPPPTY EKKRPRIQQR ELMMNSSVVR HTMPRGRDGG ATPAAAAASG SERDRNWANS  300
VRELTRAILK FGEAYEQAEN AKLQQMVEME KQRMKFAKEL ELQKMQVFMK TQLELSQLKN  360
RRVGSSNHHN NNTTTTATNN NNNNNNTNSF SSN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269\|PubMed:21330492}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00356	DAP	Transfer from AT3G14180	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019193785.1	0.0	PREDICTED: trihelix transcription factor ASIL2-like
Swissprot	Q9LJG8	1e-104	ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBL	A0A068TR21	1e-154	A0A068TR21_COFCA; Uncharacterized protein
STRING	XP_009770839.1	1e-150	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10332	18	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14180.1	3e-57	sequence-specific DNA binding transcription factors