 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Itr_sc000803.1_g00017.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
| Family |
WOX |
| Protein Properties |
Length: 312aa MW: 34815.8 Da PI: 6.9039 |
| Description |
WOX family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Itr_sc000803.1_g00017.1 | genome | Kazusa | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 63.3 | 3.7e-20 | 41 | 102 | 2 | 57 |
T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
Homeobox 2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
++R+t+t+eq+++L+el+++ r p+a++++++++kl +++ ++V++WFqN++a+e++
Itr_sc000803.1_g00017.1 41 STRWTPTTEQIRILKELYYNngVRSPTADQIQRISAKLrqygKIEGKNVFYWFQNHKARERQ 102
58****************98678*************************************97 PP
|
| 2 | Wus_type_Homeobox | 115.4 | 2.7e-37 | 40 | 104 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
++tRWtPt+eQi+iL+ely+ +G+r+P++++iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+
Itr_sc000803.1_g00017.1 40 SSTRWTPTTEQIRILKELYYnNGVRSPTADQIQRISAKLRQYGKIEGKNVFYWFQNHKARERQKK 104
789***************9779*****************************************96 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 312 aa
Download sequence Send
to blast |
MEPQQQQQYY HQTQAQQGGG NEEGGGSGSK NSNGYLCRQS STRWTPTTEQ IRILKELYYN 60
NGVRSPTADQ IQRISAKLRQ YGKIEGKNVF YWFQNHKARE RQKKRLTASA TAPPDAAAAF 120
SMQMQRPGVW RSADHCSTFN PPASSSPGMV AVGQIGNYGG YGSTVAMERS FRDCSISAGS 180
NGNGCVMAAS QNYGWVGVDH HHHHPYSSST PYYPFLDKIK STYDDHETLE EDQQDEDDQK 240
EPETLPLFPV HADHHHHGFY GGKPPPESSN GGGYYTNTDQ WFHYDHNGSA SRASLELTLN 300
SYNIATSSHH FP
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). Acts in parallel with HAM. {ECO:0000269|PubMed:12208843}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | EU672818 | 0.0 | EU672818.1 Ipomoea nil wuschel-like protein (WUS1) mRNA, complete cds. |
