PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Function |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Itr_sc000803.1_g00010.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

BBR-BPC

Protein Properties

Length: 406aa MW: 45362.5 Da PI: 5.0296

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000803.1_g00010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	291.3	4e-89	1	284	29	296
GAGA_bind 29 mssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvenslasalpvgvqvlsgtksidslqql 114 m+++aerda+i ern+al e+k a+aerdma lqrd+a+aern+al erd+++ al+l+e s++ ++ v+ ++g+++i+ q+ Itr_sc000803.1_g00010.1 1 MAIMAERDAAILERNMALDERKRALAERDMAMLQRDAAIAERNAALDERDSAISALKLRESSMNDEN--IVSKSPGAEHIHYQQE- 83 899*****************************************************999966554..7889999999996666. PP GAGA_bind 115 sepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader.............. 186 ++ ++ a++ +e+ +++ ++++ ++++ + +k+++ +++k +k++k ++ k++e++ + + Itr_sc000803.1_g00010.1 84 MHEMISAAAYDPTENLTNDPINVTDPTPQTANPRKVRQPKESKPKKASKLPRVVKREEVEDLSWQ------Avstlddwddgncge 163 77788888888666666666666666666666666655555555555554444443333322222......122344577899* PP GAGA_bind 187 ...........skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmS 261 + + dl+ ++v+ D s++PvPvCsCtG+++ CYkWGnGGWqSaCCtttiS+yPLP+ +++r +R++grKmS Itr_sc000803.1_g00010.1 164 fvdtsdeeqdkDLDDTWEEDLGFEQVNSDMSAMPVPVCSCTGTPQPCYKWGNGGWQSACCTTTISMYPLPQASHKRYSRVGGRKMS 249 ***998865334444679************************************************************** PP GAGA_bind 262 qgafkklLekLaaeGydlsnpvDLkdhWAkHGtnk 296 +af+klL++L+aeGydls p+DLkdhWAkHGtn+ Itr_sc000803.1_g00010.1 250 ASAFSKLLSRLTAEGYDLSAPLDLKDHWAKHGTNR 284 ********************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06217	3.2E-82	1	284	IPR010409	GAGA-binding transcriptional activator
SMART	SM01226	2.6E-87	1	286	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence Send to blast
MAIMAERDAA ILERNMALDE RKRALAERDM AMLQRDAAIA ERNAALDERD SAISALKLRE 60 SSMNDENIVS KSPGAEHIHY QQEMHEMISA AAYDPTENLT NDPINVTDPT PQTANPRKVR 120 QPKESKPKKA SKLPRVVKRE EVEDLSWQAV STLDDWDDGN CGEFVDTSDE EQDKDLDDTW 180 EEDLGFEQVN SDMSAMPVPV CSCTGTPQPC YKWGNGGWQS ACCTTTISMY PLPQASHKRY 240 SRVGGRKMSA SAFSKLLSRL TAEGYDLSAP LDLKDHWAKH GTNRIQDVAQ RFAKVLNSIY 300 CDDNNHPAAL SFLFHSIGNQ SQANLSFLPK QINMMQQQNL ARSCMREPDT EITKNNNEIQ 360 QETLAGKAKL NNSLSSHSDI SSKRTPIDSV SKKDSIQLLE DATSHN

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence Send to blast

MAIMAERDAA ILERNMALDE RKRALAERDM AMLQRDAAIA ERNAALDERD SAISALKLRE  60
SSMNDENIVS KSPGAEHIHY QQEMHEMISA AAYDPTENLT NDPINVTDPT PQTANPRKVR  120
QPKESKPKKA SKLPRVVKRE EVEDLSWQAV STLDDWDDGN CGEFVDTSDE EQDKDLDDTW  180
EEDLGFEQVN SDMSAMPVPV CSCTGTPQPC YKWGNGGWQS ACCTTTISMY PLPQASHKRY  240
SRVGGRKMSA SAFSKLLSRL TAEGYDLSAP LDLKDHWAKH GTNRIQDVAQ RFAKVLNSIY  300
CDDNNHPAAL SFLFHSIGNQ SQANLSFLPK QINMMQQQNL ARSCMREPDT EITKNNNEIQ  360
QETLAGKAKL NNSLSSHSDI SSKRTPIDSV SKKDSIQLLE DATSHN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019172234.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE6-like
Refseq	XP_019172235.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE6-like
Swissprot	Q8L999	2e-78	BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBL	A0A1U7XIZ5	1e-124	A0A1U7XIZ5_NICSY; barley B recombinant-like protein D
TrEMBL	H1ZN84	1e-124	H1ZN84_TOBAC; GAGA-binding transcriptional activator
STRING	XP_009789611.1	1e-125	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8062	22	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42520.2	8e-81	basic pentacysteine 6