PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000793.1_g00023.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 709aa    MW: 79351.3 Da    PI: 6.1828
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000793.1_g00023.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.46.6e-202580156
                             TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                             +++ +++t++q+++Le++F+ +++p++++r++L+++lgL+ +q+k+WFqN+R++ k
  Itr_sc000793.1_g00023.1 25 KKHYHRHTSQQIQQLEAFFKDCPHPDENQRRQLSRELGLEPKQIKFWFQNKRTQTK 80
                             688999**********************************************9987 PP
2START128.86.7e-412244406206
                              HHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S... CS
                    START   6 aaqelvkkalaeepgWvkssesengdevlqkfeeskv...........dsgealrasgvvdmvlallveellddkeqWdetla... 77 
                              a++el+ + +a+ep+W + +  e+g  vl +++ ++v            ++e +++s+vv++ +++l e  ld + +W   ++   
  Itr_sc000793.1_g00023.1 224 AMEELIELLQADEPLWIRTP--EDGRLVLHRETYDRVfpkvnylrsvsTRTESSKDSAVVPASPVELIEMCLDPS-KWVDFFPtiv 306
                              799*****************..777777777777777777788888999****************9999999999.***9999999 PP

                              .EEEEEEEECTT...EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEE CS
                    START  78 .kaetlevissg...galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepk 157
                               ka ++ev++sg   g lqlm+ ++  lsp+v+ Rdf f+Ry+rql a  w+ vdvS d  ++++   +s+    +lpSg+li+++
  Itr_sc000793.1_g00023.1 307 aKARIIEVLDSGmlgGSLQLMFEKMHILSPMVApRDFIFLRYCRQLDATAWIMVDVSYDCFKENEGfAPSYSW--KLPSGCLIQDL 390
                              9*******************************99******************************999999987..*********** PP

                              CTCEEEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                    START 158 snghskvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                               ng+skvtw+ehv +++++  h l+r l+  ++a ga++w  tlqr ce+
  Itr_sc000793.1_g00023.1 391 HNGKSKVTWIEHVQVDDKTQtHRLYRDLICGSQAYGANRWIVTLQRMCER 440
                              *****************9998***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.6E-19882IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.2E-211076IPR009057Homeodomain-like
PROSITE profilePS5007117.1192282IPR001356Homeobox domain
SMARTSM003894.3E-182486IPR001356Homeobox domain
PfamPF000461.8E-172580IPR001356Homeobox domain
CDDcd000861.84E-172582No hitNo description
PROSITE patternPS0002705780IPR017970Homeobox, conserved site
PROSITE profilePS5084839.134210443IPR002913START domain
SuperFamilySSF559611.43E-30211441No hitNo description
CDDcd088757.58E-93214439No hitNo description
SMARTSM002342.3E-28219440IPR002913START domain
PfamPF018527.6E-35224440IPR002913START domain
Gene3DG3DSA:3.30.530.202.6E-8226406IPR023393START-like domain
SuperFamilySSF559619.45E-11472693No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    Send to blast
MDSAYRGNGS GDDNDLDISS SRRGKKHYHR HTSQQIQQLE AFFKDCPHPD ENQRRQLSRE  60
LGLEPKQIKF WFQNKRTQTK AQGERADNSA LRTENERIHC ENLAMREALK NVVCLQCDGP  120
ALGEEERKRG LQILRMENAQ LKEEHERLSA MISNLMGRSS MMAAQASSGV LHEESNYLVA  180
GGSAPVDPRN NNNNPVVVSQ PLFTLGGGVQ EMEKSAMVDT MAIAMEELIE LLQADEPLWI  240
RTPEDGRLVL HRETYDRVFP KVNYLRSVST RTESSKDSAV VPASPVELIE MCLDPSKWVD  300
FFPTIVAKAR IIEVLDSGML GGSLQLMFEK MHILSPMVAP RDFIFLRYCR QLDATAWIMV  360
DVSYDCFKEN EGFAPSYSWK LPSGCLIQDL HNGKSKVTWI EHVQVDDKTQ THRLYRDLIC  420
GSQAYGANRW IVTLQRMCER YGFSMGVKGA PTARHELEEV MNEPQGRRSV MQLSQRMVKS  480
FCEILNMGER VDFPQTSEMN NSGVRISLRK SSTETAQSAD ALIVCAASSL WLPLPFDHLF  540
NFFRDDQLRA QWDVLSNGYP VTEVARIPTG NHPGNCVSIF QPYVSKESSM LVLQESCVNS  600
LEGHVVYAPI DLPVITASIN GEDPIKIPML PSGFVISGDG RLEKKSSTAQ SSNSKMGQGG  660
SLLTVAFQIL ISNGSLSKQV NMECVATVHA LISSTIQKIK TALDCSDLD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019172066.10.0PREDICTED: homeobox-leucine zipper protein ROC8-like
TrEMBLA0A022QU910.0A0A022QU91_ERYGU; Uncharacterized protein
STRINGMigut.H02245.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24902351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0homeodomain GLABROUS 11