PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000792.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 281aa    MW: 30626.6 Da    PI: 6.3409
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000792.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.53.5e-14108149345
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                               W+++E+ ll+++++++G g+W+ +a+++g +++  qc+++++
  Itr_sc000792.1_g00001.1 108 DWSADEEILLLEGIEMHGLGNWSDVAEHVG-TKSKQQCVDHYN 149
                              5*****************************.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM002911.0E-114589IPR000433Zinc finger, ZZ-type
PROSITE profilePS5013511.1054592IPR000433Zinc finger, ZZ-type
PfamPF005693.1E-104689IPR000433Zinc finger, ZZ-type
SuperFamilySSF578502.59E-1548112No hitNo description
CDDcd023353.04E-254997No hitNo description
PROSITE patternPS0135705178IPR000433Zinc finger, ZZ-type
SuperFamilySSF466893.51E-13101155IPR009057Homeodomain-like
PROSITE profilePS5129322.576104156IPR017884SANT domain
SMARTSM007178.9E-12105154IPR001005SANT/Myb domain
PfamPF002498.9E-14108149IPR001005SANT/Myb domain
CDDcd001672.59E-13109149No hitNo description
Gene3DG3DSA:1.10.10.602.5E-10109151IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MGRSRAVPHS ADDDPSQSRS KRKRTSQNVE SLETGTAGQG LSDGKKASYH CNYCNKDISG  60
KIRIKCAVCS DFDLCIECFS VGAEVQPHKS NHPYRVMDNL SFPLICPDWS ADEEILLLEG  120
IEMHGLGNWS DVAEHVGTKS KQQCVDHYNA IYMNSPCFPL PDMSHVMGKN REELLAMAKE  180
LGELKKGYTA VGDVNVKEET PFLGRVKMED QRKEASTGRA SSCLASADVV PGGAPTGAGK  240
RVSMGPSKDG HDGIKLEGMN CSFLEFVSEV YCFGALHLKS D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cw3_E2e-38491645120Transcriptional adapter 2
6cw3_G2e-38491645120Transcriptional adapter 2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known. ADA2 and GCN5 function to acetylate nucleosomes, opening up the promoter region (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019193880.10.0PREDICTED: transcriptional adapter ADA2-like
SwissprotQ75LL61e-100TADA2_ORYSJ; Transcriptional adapter ADA2
TrEMBLA0A328D8U61e-146A0A328D8U6_9ASTE; Transcriptional adapter
STRINGXP_009803647.11e-130(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24471215
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]