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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000790.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | MYB_related | ||||||||
Protein Properties | Length: 355aa MW: 39657.8 Da PI: 7.8808 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.8 | 6.6e-10 | 5 | 34 | 1 | 30 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIart 30 +++WT eE+e l +v+++G g Wk I r Itr_sc000790.1_g00005.1 5 KQKWTSEEEEALRAGVAKHGAGKWKNIQRD 34 79*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.214 | 1 | 51 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.01E-10 | 2 | 50 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.7E-10 | 5 | 49 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.4E-6 | 5 | 32 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 1.64E-13 | 6 | 50 | No hit | No description |
SMART | SM00526 | 2.2E-13 | 194 | 259 | IPR005818 | Linker histone H1/H5, domain H15 |
SuperFamily | SSF46785 | 2.01E-13 | 194 | 273 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PROSITE profile | PS51504 | 21.761 | 196 | 264 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene3D | G3DSA:1.10.10.10 | 1.3E-11 | 196 | 266 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00538 | 1.9E-8 | 199 | 257 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MGNPKQKWTS EEEEALRAGV AKHGAGKWKN IQRDPEFNHL LYSRSNIDLK IGSNSYTMDL 60 GQPARWTITI YILNVHNSHS IATMGVLKSS SIDIEPAPSL APKDWWKLCS GENLLSLIDV 120 LVPSDPSDKW RNLNVSANGQ NPRDKSRTPK VKANPDSSVT PVLNAQTPAS SIPASDDVAT 180 DAIVEDNSKC LLDGKTASKY NAMIYEALST LKDPDGSDTS TIVRFIEQRQ EVPQNFRRLL 240 SSRLRKLVQQ EKLEKIQNCF RIKRELLGSP KKKESWSRHD QNQNQKTCYL GNTVEEAAVS 300 AAYRIAEAEN KSFVAAEAVK EAERVSRMAE DSNMLLQLAK EIFEKCENGE IVLMA |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019150877.1 | 1e-153 | PREDICTED: telomere repeat-binding factor 4-like | ||||
Refseq | XP_019150878.1 | 1e-153 | PREDICTED: telomere repeat-binding factor 4-like | ||||
TrEMBL | A0A068U3Q4 | 6e-90 | A0A068U3Q4_COFCA; Uncharacterized protein | ||||
STRING | XP_009757029.1 | 2e-86 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2504 | 23 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17520.1 | 2e-37 | MYB_related family protein |