PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Itr_sc000785.1_g00007.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

LBD

Protein Properties

Length: 214aa MW: 23413.8 Da PI: 9.0561

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000785.1_g00007.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	130.8	5.8e-41	43	142	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +CaaCk+lrr+C+++C+++pyf ++p+kfa+vhk+FGasnv+kll ++p +r da++slvyeA++r+rdPvyG++g i++lqqq Itr_sc000785.1_g00007.1 43 PCAACKLLRRRCVEECPFSPYFSPHEPHKFAAVHKVFGASNVSKLLMEVPVRQRADAANSLVYEANVRLRDPVYGCMGAISALQQQ 128 7*********************************************************************************** PP DUF260 87 leqlkaelallkee 100 l+ l++el+++k+e Itr_sc000785.1_g00007.1 129 LQFLQSELNSVKAE 142 *******99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.218	42	143	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.2E-41	43	140	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MEMVEKKLKT DTEASPSQMV TGRRTHVSSA PPNCTAALNT VTPCAACKLL RRRCVEECPF 60 SPYFSPHEPH KFAAVHKVFG ASNVSKLLME VPVRQRADAA NSLVYEANVR LRDPVYGCMG 120 AISALQQQLQ FLQSELNSVK AELLRYKYRQ VVNGVTITSS AQTPPPALMN SMAVSVAEPP 180 QAPPHSSPPL FTTSSNMASF SSVIQNNNNI SFFQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-45	43	146	11	114	LOB family transfactor Ramosa2.1
5ly0_B	4e-45	43	146	11	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019159698.1	1e-114	PREDICTED: LOB domain-containing protein 15-like
Swissprot	Q9AT61	1e-70	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A4D8YJA1	2e-79	A0A4D8YJA1_SALSN; Uncharacterized protein
STRING	Solyc06g082430.1.1	8e-79	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	2e-71	LOB domain-containing protein 15

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]