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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000779.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | ZF-HD | ||||||||
Protein Properties | Length: 312aa MW: 34650 Da PI: 8.263 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 103.5 | 1.3e-32 | 85 | 141 | 2 | 59 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 + vrY+eClkNhAas+Gg+a+DGCgEfmps geeg+ +al+C+AC+CHRnFHR+eve Itr_sc000779.1_g00003.1 85 KMVRYRECLKNHAASMGGNATDGCGEFMPS-GEEGSLEALTCSACNCHRNFHRKEVEG 141 679**************************9.999*********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.8E-29 | 87 | 139 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 9.0E-26 | 87 | 142 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 3.9E-31 | 88 | 139 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.576 | 89 | 138 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 5.2E-30 | 219 | 295 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.81E-18 | 226 | 294 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.1E-26 | 233 | 289 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048574 | Biological Process | long-day photoperiodism, flowering | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MEIPSSHEDG EMPIPINSTY GHGQHMIMHH HEPPTHNHNH NNNHIIIPPS SNGPPIADHP 60 PAAAYNNNNN NNNSQSQLVI TSSKKMVRYR ECLKNHAASM GGNATDGCGE FMPSGEEGSL 120 EALTCSACNC HRNFHRKEVE GEPLPPPLSL PCDCYHHNTI KRKVFVGHHK ALPGPEPPLG 180 GGGGGGYPRA AAAAAAAAVP HQMIMSYNMA TLLQPSESDE HEEQRPSHQL MVKKRFRTKF 240 TQEQKDKMLS FAERVGWKIQ KQEESVVQQF CQEVGVKRRV LKVWMHNNKH NLAKKTNNPN 300 PNPNPNPPQI QL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 9e-25 | 234 | 291 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00258 | DAP | Transfer from AT2G02540 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019191141.1 | 1e-121 | PREDICTED: zinc-finger homeodomain protein 4 | ||||
Swissprot | Q9M9S0 | 9e-78 | ZHD4_ARATH; Zinc-finger homeodomain protein 4 | ||||
TrEMBL | A0A061GFH0 | 1e-109 | A0A061GFH0_THECC; Homeobox protein 31 | ||||
STRING | EOY25774 | 1e-110 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5154 | 23 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14440.2 | 1e-74 | homeobox protein 31 |