PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000764.1_g00026.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family B3
Protein Properties Length: 307aa    MW: 34727.7 Da    PI: 4.6323
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000764.1_g00026.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.31e-1120911590
                             -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                       B3 15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90
                              + +p +f e+ gg+   +k+++l++ s ++W++++  + ++++  ++++W + vk+n +  gD + F++ g   f
  Itr_sc000764.1_g00026.1 20 KMEIPFSFKESVGGVV--PKKVKLRNCSKKVWSMEM--TETGDGLCFQNNWAKLVKDNSITNGDCLFFSYGGYGLF 91
                             5789999999999994..668***************..*******************************9775555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.659699IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-131898IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-1419103IPR015300DNA-binding pseudobarrel domain
PfamPF023625.3E-92091IPR003340B3 DNA binding domain
CDDcd100171.01E-82097No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MAASKFKLLR QFCPLTCTEK MEIPFSFKES VGGVVPKKVK LRNCSKKVWS MEMTETGDGL  60
CFQNNWAKLV KDNSITNGDC LFFSYGGYGL FEFVLFDQFG CEKIVVRDAQ PQVNKEVEEE  120
EEDDDDDDVV SDDDDNDNDC GDSGDEGDDS NFDNEADKTK VEDYGGNEDE SNFVIVEDKN  180
EIEEDDEEVK AHMLLGLTKS KQKRNNSCGF KKCAGVSARE GSSSKKNNNA FDRFGIKLFS  240
SGQYIQPKNP YFVRKLGQKN RGALYIPMDV IKDYMQYCIA SHFNPARHER PRMEIKRLRI  300
GGMGGHG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019156075.12e-96PREDICTED: B3 domain-containing protein At5g60140-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10912264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46770.18e-13B3 family protein