PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000760.1_g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | ERF | ||||||||
Protein Properties | Length: 400aa MW: 43474.8 Da PI: 6.638 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.8 | 6.3e-19 | 219 | 267 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr+++ +g+WvAeIr p++ r+r++lg+f+taeeAa a++ a+ l+g Itr_sc000760.1_g00010.1 219 FRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEEAAFAYDTAAYMLRG 267 8******9.**********955...5**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.86E-30 | 217 | 277 | No hit | No description |
SMART | SM00380 | 4.1E-34 | 218 | 281 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.418 | 218 | 275 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.1E-31 | 218 | 276 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.03E-22 | 218 | 276 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.2E-12 | 219 | 267 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-10 | 219 | 230 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-10 | 241 | 257 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 400 aa Download sequence Send to blast |
MAASGSPFSG VFCSPNETAY SSPERFVSSS DSNSSTDEAS NNFSDFATIS DQVAAMNEHD 60 HTRSFPHGGL GLSFSDQAAA GIPLNFLESF PSSVTNAPSS SSLSQSNFPN LGLFLQQPSV 120 VETPKKPSSS PSSSFTNFNN PSSSSSSSSY TNFNNFLFPV SQLRPSAESW VRMNQTLTTY 180 SSSSKGFSDF WLSNTRTQPM KHTGRRTTAE TASPPGKLFR GVRQRHWGKW VAEIRLPRNR 240 TRVWLGTFDT AEEAAFAYDT AAYMLRGDYA HLNFPDLKHR LRDNCLNGNT AALLEAKLRS 300 ISQGTAAGAT KKANTNTNNN NNDEKMIKDS PANVKPLLVN ESSSVVTWTQ NPVTPAGEIA 360 AEKKKEEAAA PPENEGGFQL SRMPSLDMDT IWAELLVSDS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 7e-19 | 216 | 275 | 3 | 63 | ATERF1 |
3gcc_A | 7e-19 | 216 | 275 | 3 | 63 | ATERF1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019180338.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF062-like | ||||
TrEMBL | A0A2C9UDB9 | 5e-98 | A0A2C9UDB9_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_023072m | 9e-99 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10921 | 18 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13620.1 | 9e-45 | ERF family protein |