PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Itr_sc000759.1_g00002.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB_related

Protein Properties

Length: 278aa MW: 31654.9 Da PI: 4.9012

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000759.1_g00002.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.5	1.5e-08	3	27	23	48
-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48 +W+ Ia+ ++ gRt++++k++w+++l Itr_sc000759.1_g00002.1 3 RWSMIAAQLP-GRTDNEIKNYWNSHL 27 5*******.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.425	1	31	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.0E-12	3	27	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.24E-7	3	31	IPR009057	Homeodomain-like
Pfam	PF00249	6.0E-6	3	27	IPR001005	SANT/Myb domain
CDD	cd00167	4.03E-6	3	27	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MCRWSMIAAQ LPGRTDNEIK NYWNSHLSRK FYSFRRAGSE KTIENLKTDL VKAAEQTKRR 60 RGKVSRSAMK KNKTTGYKHF SSNINHPPEL PHFQTLCTEP VNNNAATSTV QIPSTPPILM 120 EKEDDIDTSS FLCMAGSEYF SLDDIMPILV EEMDPGTILS TSLGNNVKEF GVVAQSQHDD 180 LAKNSNSSVH IYSEFIPSDH HHQFGGENSE STATSSSFPV EHHCSLTQNI IDWDNWQYYW 240 DDDSGNNLCN TQNLMPQQND EDDVMLSSPW PWDDTFYT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019188365.1	1e-127	PREDICTED: transcription repressor MYB6-like
Refseq	XP_019188366.1	1e-127	PREDICTED: transcription repressor MYB6-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA19665	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47460.1	4e-17	myb domain protein 12