PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000757.1_g00004.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 429aa    MW: 46238.6 Da    PI: 5.0758
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000757.1_g00004.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS374.11.8e-114674263374
                     GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                               lLl+cAe+v+ ++l  a++lL ++ el+sp g++ +R+aayf+eAL+ar+ +s  + y+ l+ ++ + ++s++ +aal+ ++ +s
  Itr_sc000757.1_g00004.1  67 GLLLQCAECVAMDNLDDASNLLPEIAELSSPFGSSAERVAAYFAEALSARIISSYLGSYSPLTLKTLTLTHSQKLFAALQSYNSIS 152
                              58******************************************************************99**************** PP

                     GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgv 174
                              P++kfsh+taNqaI +a++ge++vH+iD+di+qGlQWp L++ LasR+++  s++iTgvgs    s e le+tg+rLa+fA++lg+
  Itr_sc000757.1_g00004.1 153 PLVKFSHFTANQAIFQALDGEDHVHVIDLDIMQGLQWPGLFHILASRSRKIRSIKITGVGS----SIELLESTGRRLAEFATSLGL 234
                              *************************************************************....9******************** PP

                     GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflea 260
                              pfef++l  k  +  ++++L vk gE+++V++++  h l+d ++s       +L+l+  l+Pk++++veq+++h ++sFl rf+ea
  Itr_sc000757.1_g00004.1 235 PFEFRPLEGKIGSITDPSQLGVKLGETTVVHWMH--HCLYDVTGSDFG----TLRLLTLLRPKLITIVEQDLSH-GGSFLGRFVEA 313
                              ******988899999******************9..888888888888....**********************.789******** PP

                     GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvks 346
                              l+yysalfd+l  +l+++s er++vE++l+g ei+n+va  g +r+ + + +e+W e l+++GF+pv+l  + a+qa lll ++++
  Itr_sc000757.1_g00004.1 314 LHYYSALFDALGDGLGADSVERHTVEQQLFGCEIRNIVAVGGPKRTGEVK-VERWGEELKRVGFGPVSLAGSPAAQAGLLLGMFPW 398
                              ********************************************998887.9********************************** PP

                     GRAS 347 dgyrveeesgslvlgWkdrpLvsvSaWr 374
                              +gy++ eesg+l lgWkd +L+++SaW+
  Itr_sc000757.1_g00004.1 399 KGYTLVEESGCLKLGWKDLSLLTASAWQ 426
                              ***************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.24739406IPR005202Transcription factor GRAS
PfamPF035146.3E-11267426IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MASKRSVIDL GGAAAAETAA AAVEDSSFKR PRHLSSSGDP SVSGEKGEEE EEEGVMDTES  60
TGLRLLGLLL QCAECVAMDN LDDASNLLPE IAELSSPFGS SAERVAAYFA EALSARIISS  120
YLGSYSPLTL KTLTLTHSQK LFAALQSYNS ISPLVKFSHF TANQAIFQAL DGEDHVHVID  180
LDIMQGLQWP GLFHILASRS RKIRSIKITG VGSSIELLES TGRRLAEFAT SLGLPFEFRP  240
LEGKIGSITD PSQLGVKLGE TTVVHWMHHC LYDVTGSDFG TLRLLTLLRP KLITIVEQDL  300
SHGGSFLGRF VEALHYYSAL FDALGDGLGA DSVERHTVEQ QLFGCEIRNI VAVGGPKRTG  360
EVKVERWGEE LKRVGFGPVS LAGSPAAQAG LLLGMFPWKG YTLVEESGCL KLGWKDLSLL  420
TASAWQPSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-162474271380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019160841.10.0PREDICTED: scarecrow-like protein 23
SwissprotQ9FHZ10.0SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A061DTB20.0A0A061DTB2_THECC; SCL domain class transcription factor
STRINGEOX931730.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA107452126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.10.0GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]