PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

ERF

Protein Properties

Length: 160aa MW: 18642.5 Da PI: 9.4476

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000753.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	60.9	2.9e-19	107	157	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 +++GVr+++ +g+Wv+eIrdp+ r r +lg ++t eeAa +++a++kl+g+ Itr_sc000753.1_g00001.1 107 KFRGVRQRP-WGKWVVEIRDPT----ReVRLWLGIYDTVEEAAMVYDNAALKLRGP 157 89*****.******83....47************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	2.4E-24	106	158	IPR001471	AP2/ERF domain
SMART	SM00380	3.2E-21	107	160	IPR001471	AP2/ERF domain
CDD	cd00018	6.80E-24	107	159	No hit	No description
PROSITE profile	PS51032	20.574	107	160	IPR001471	AP2/ERF domain
Pfam	PF00847	1.6E-12	107	156	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.5E-17	107	158	IPR016177	DNA-binding domain
PRINTS	PR00367	3.7E-9	108	119	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.7E-9	130	146	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MAPPIXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXTDLK KVRITDLDAT DTSSDEEELY 60 ERRRVRRYIH EINIETTINI DAVKSGKKRP VAEVKEAPVP AVNRVRKFRG VRQRPWGKWV 120 VEIRDPTREV RLWLGIYDTV EEAAMVYDNA ALKLRGPDSD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	9e-16	106	156	4	55	ATERF1
3gcc_A	9e-16	106	156	4	55	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:16832061}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU171988	2e-79	GU171988.1 Ipomoea batatas microsatellite Stv_Ipb_1659 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019177798.1	2e-62	PREDICTED: ethylene-responsive transcription factor CRF1-like
Swissprot	Q9SUE3	2e-34	CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBL	A0A1S4DC78	3e-43	A0A1S4DC78_TOBAC; ethylene-responsive transcription factor CRF4-like
STRING	XP_009624576.1	5e-44	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA494	23	126

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G23750.2	3e-27	cytokinin response factor 2

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zwack PJ,Compton MA,Adams CI,Rashotte AM Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance. Plant Cell Rep., 2016. 35(3): p. 573-84 [PMID:26650835] Raines T, et al. The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis. Plant J., 2016. 85(1): p. 134-47 [PMID:26662515]