PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000749.1_g00009.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family Trihelix
Protein Properties Length: 351aa    MW: 38507.9 Da    PI: 5.3814
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000749.1_g00009.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix88.66.9e-2842136186
                 trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsesss 77 
                              rWt+qe+l+Li+++r  e+r+rrg+         + +p+W++vs++++++g++r+p+qC+++w+nl++++kkike+e + ++e++s
  Itr_sc000749.1_g00009.1  42 RWTRQEILVLIQGKRVAESRVRRGRtagmefgsgQVEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWETQIREETES 127
                              8**********************97777888888**********************************************999999 PP

                 trihelix  78 tcpyfdqle 86 
                               +++ ++l+
  Itr_sc000749.1_g00009.1 128 FWVMRNDLR 136
                              9*9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138379.0E-1242132No hitNo description
PROSITE profilePS500906.442108IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.608.0E-542107IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MALEGLSLAR TPETEAGGGR LVAAAAAVNG GDDGSKAPRL PRWTRQEILV LIQGKRVAES  60
RVRRGRTAGM EFGSGQVEPK WASVSSYCKR HGVNRGPVQC RKRWSNLAGD FKKIKEWETQ  120
IREETESFWV MRNDLRRERK LPGFFDREVY DILDRGDSAA AAAEEVTGAL ALALGPSVDP  180
DPETLFDSGR SAAADDGLFS DFEQSGQDEA GVASPRKDLP AAAEEVPIPP AAIPAPIPIS  240
EQQYEPFSQD TPAQGTSHQK QPASEPDVRS AQEGRKRKRN MTDTDADEES ENLQHQLVKA  300
LERNGKLLSS QLEAQNTHLQ LDREQRKDHV NSLIAVLNKL SDALGRIADK L
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019181001.10.0PREDICTED: trihelix transcription factor ASR3 isoform X2
SwissprotQ8VZ201e-113ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBLA0A484KI041e-177A0A484KI04_9ASTE; Uncharacterized protein
STRINGXP_009619351.11e-161(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17862460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.11e-107Trihelix family protein
Publications ? help Back to Top
  1. Vidal EA, et al.
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
    BMC Genomics, 2013. 14: p. 701
    [PMID:24119003]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]