PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000748.1_g00024.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 920aa    MW: 103166 Da    PI: 7.421
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000748.1_g00024.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.91e-122873148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+++ +Ede++v+++++lG++  ++ a+ ++ gR+++++k++w+++l
  Itr_sc000748.1_g00024.1 28 KGAFSVQEDEIIVKLHNKLGNK-GSAMAELLP-GRSDNEIKDHWHTHL 73
                             799*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.76E-141580IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-201876IPR009057Homeodomain-like
PROSITE profilePS5129420.9332377IPR017930Myb domain
SMARTSM007174.6E-112775IPR001005SANT/Myb domain
PfamPF002492.6E-102873IPR001005SANT/Myb domain
CDDcd001677.85E-83073No hitNo description
PIRSFPIRSF0006411.4E-261105920IPR024171S-receptor-like serine/threonine-protein kinase
PROSITE profilePS5092718.502122248IPR001480Bulb-type lectin domain
Gene3DG3DSA:2.90.10.104.5E-26122257IPR001480Bulb-type lectin domain
SMARTSM001081.6E-36128252IPR001480Bulb-type lectin domain
CDDcd000281.63E-29128252No hitNo description
PfamPF014532.6E-27172279IPR001480Bulb-type lectin domain
SuperFamilySSF511104.84E-25172283IPR001480Bulb-type lectin domain
PfamPF009541.4E-21311421IPR000858S-locus glycoprotein domain
CDDcd010981.21E-25429518No hitNo description
PfamPF082764.7E-23437503IPR003609PAN/Apple domain
PROSITE profilePS5094810.974437518IPR003609PAN/Apple domain
SMARTSM004731.4E-10438517IPR003609PAN/Apple domain
Gene3DG3DSA:2.60.120.2001.2E-9530615IPR013320Concanavalin A-like lectin/glucanase domain
SuperFamilySSF561128.23E-79586881IPR011009Protein kinase-like domain
PROSITE profilePS5001137.177602883IPR000719Protein kinase domain
SMARTSM002201.0E-25602870IPR000719Protein kinase domain
PfamPF077141.3E-48604810IPR001245Serine-threonine/tyrosine-protein kinase catalytic domain
CDDcd140663.32E-93608872No hitNo description
Gene3DG3DSA:3.30.200.203.4E-26616679No hitNo description
Gene3DG3DSA:1.10.510.103.1E-41682869No hitNo description
PROSITE patternPS001080723735IPR008271Serine/threonine-protein kinase, active site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006468Biological Processprotein phosphorylation
GO:0048544Biological Processrecognition of pollen
GO:0003677Molecular FunctionDNA binding
GO:0004674Molecular Functionprotein serine/threonine kinase activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 920 aa     Download sequence    Send to blast
MVKTPSVDKN GIKKGLRWMN YLRPGLKKGA FSVQEDEIIV KLHNKLGNKG SAMAELLPGR  60
SDNEIKDHWH THLKNRAKQT QKPEESMEEL LPPYAETSEF SDFEFNRRKM TFLTFLILTS  120
STDTITFNQP LKDGDLLISN DSSYALGFFT PGNSIGKRYV GLWYLKIPEK LVVWVANRDN  180
PVNGTSGILF IDSTGNLVIQ DNKTGTPVWN TSLSFDPTGT RDYSAQLKDT GNLILYHDRE  240
KRVDKWQSFD YPTNTLLASM KLGVGKNKSL NWFLRSWKSP DDPGTGDYTF GIDLIGKPQA  300
FLYKNSSPVC RLGPWNGLRW SGLPEMTPEI TPYAFTDNDE EFSEAYWIKD PLSVYTIVMV  360
NDTGKVNKIL WKGNNDSEKK WAGVWYFPNV DCDRYGHCGA FGICGPGGFS CRCVSGFKPK  420
SSQDWSQGCR RNQTEVCRNG EGFLKLENMK IPDTKMTAVN TTIGIEECRE LCLSNCSCTA  480
YASANISDGG TGCITWYGDL IDMREFTHGG QDMFVRVSAS DLGQHVKKSK GLNGKWLIVT  540
VVVPVAAAVI LLLLYLTLLV KGRKGNKKPA VAMGKYVDDE DGSASDVLTY DLNTIRAATD  600
NFSADNKLGE GGFGPVYQGK LQNGDLVAVK RLTKTSLQGI VEFKNEVRLI AKLQHINLVR  660
LLGCCIQQGE KMLVYEYLPN KSLDCFIFDN AQRVSLDWRK RFEIISRIAE GLVYLHQDSR  720
LRIIHRDLKA SNILLDAKMQ PKISDFGMAR IFEEQQVEAN TNRVVGTYGY MSPEYAMEGL  780
FSVKSDVFSF GVLLLEIVTG KKNKYRHNEN SLNLIGDLWD LWSEERALEI VDPALGESYD  840
GQEVLRCIHI GLLCVQPYPG DRPIMSEVIF MLINDTKLPH PNKPGFVINQ GNPTTAPFSY  900
PTTDGNQSIN GMSFTAMDGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gyy_A8e-8513752223403S-receptor kinase SRK9
5gyy_B8e-8513752223403S-receptor kinase SRK9
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019168912.10.0PREDICTED: uncharacterized protein LOC109164821
TrEMBLA0A484LYQ00.0A0A484LYQ0_9ASTE; Uncharacterized protein
STRINGPGSC0003DMT4000360380.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25560.13e-21myb domain protein 18