![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Itr_sc000748.1_g00009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 237aa MW: 26368.2 Da PI: 5.7711 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.5 | 1.6e-10 | 82 | 128 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + +rE+ RR r+N++f+eL ++ + + +K++K++iL Av+ + +L Itr_sc000748.1_g00009.1 82 KAQREKMRRYRLNDRFQELSCVMDPG---KPPKMDKSAILSDAVRMVLQL 128 678****************7555555...9999*************9998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.827 | 77 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.7E-8 | 81 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.9E-12 | 82 | 150 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.0E-6 | 83 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.76E-12 | 83 | 156 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.39E-9 | 85 | 133 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 237 aa Download sequence Send to blast |
MAAPEEDGSN WLLLDLGFED IPLPGGKFAP LEPGYEWHSN AILAPAPPSI RQDESYVKFD 60 VSNGCSARKR MKSGACSGAD SKAQREKMRR YRLNDRFQEL SCVMDPGKPP KMDKSAILSD 120 AVRMVLQLRD EAQKLKESFE DLQEQVNELK AEKNELKDEK QKLKEEKDKL ELQLKALNSR 180 PGFLPHPPAT AVPFPAPHQL VGGKLVPFVG YPGIPMWQFA APAVIDTPED HSLPPVA |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019169536.1 | 1e-164 | PREDICTED: transcription factor bHLH115-like | ||||
Refseq | XP_019169538.1 | 1e-164 | PREDICTED: transcription factor bHLH115-like | ||||
Refseq | XP_019169539.1 | 1e-164 | PREDICTED: transcription factor bHLH115-like | ||||
Swissprot | Q9C682 | 5e-66 | BH115_ARATH; Transcription factor bHLH115 | ||||
TrEMBL | A0A1S4C988 | 7e-99 | A0A1S4C988_TOBAC; transcription factor ILR3-like | ||||
STRING | XP_009617474.1 | 1e-100 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA950 | 24 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G51070.1 | 2e-51 | bHLH family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|