PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000742.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family AP2
Protein Properties Length: 444aa    MW: 48638.3 Da    PI: 8.3216
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000742.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.32.8e-16147196155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a++k++g
  Itr_sc000742.1_g00001.1 147 SQYRGVTFYRRTGRWESHIWD------CgKQIYLGGFDTAHFAARAYDRAALKFRG 196
                              78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.83E-25147206No hitNo description
SuperFamilySSF541711.5E-15147205IPR016177DNA-binding domain
PfamPF008473.4E-8147196IPR001471AP2/ERF domain
PROSITE profilePS5103217.596148204IPR001471AP2/ERF domain
SMARTSM003809.9E-32148210IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-16148204IPR001471AP2/ERF domain
SMARTSM003800.031240303IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MLDLNLEAVP GLDSAEITVA SAIFGGDSGT SVTASSSDES NTSSHTLAHG GCNSLCTLNF  60
SILKSDADQA IEAEEDCNGD HSAVTDQLVP VAGQSFPSTV EPPAPAPLSQ SWLNLSVMES  120
GCNSPRMPQP HQPAVKKPRR GPRSRSSQYR GVTFYRRTGR WESHIWDCGK QIYLGGFDTA  180
HFAARAYDRA ALKFRGVDAD INFQISDYEE DMKQTKNLTK EEFVQTLRRQ STGFYKRTSR  240
YRGVTLHKCG RWDAQIGQFL GDRTSHFICK IPMLGSRTYD KEAIKCNQHR DAGGGNGLDP  300
NHWMSAPLGG LKGPDNTRKL EFNFGVCQTP VLKQVNVLFT NAYPSRFSHD SSYITVDSSP  360
ATPRAPAMAS KYSIWTIPSM HPGIISNTQE RPMGTRAEKP PAAPAFSDWQ WKMQSQGVVT  420
SSVPLYSSAA SSGFSSTTTP LRHP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137142PRRGPR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019196497.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X1
TrEMBLA0A328DAL61e-105A0A328DAL6_9ASTE; Uncharacterized protein
STRINGXP_009772737.11e-97(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.35e-61related to AP2.7