PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000731.1_g00014.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | B3 | ||||||||
Protein Properties | Length: 289aa MW: 33116.5 Da PI: 4.2281 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 38.7 | 1.8e-12 | 195 | 274 | 12 | 93 |
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 +g l++p + +++h++ + tl+l+d++gr+W+ +++ ++ +++ + ++GW++ ++ n ++ D ++ ++++ s+ ++ Itr_sc000731.1_g00014.1 195 DRGGLYIPMDVIKDHNIA--LPPTLILRDPRGREWKSEVKNWRDGRTWLTSGGWQSLCRVNLVDKDDKCICEFVRPSTNDML 274 35679**********655..6779***************99**99999999*******************998876555444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 9.389 | 1 | 50 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.35E-6 | 15 | 54 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.7E-5 | 17 | 54 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.3E-19 | 180 | 282 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.32E-18 | 180 | 279 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.547 | 184 | 283 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.27E-9 | 185 | 281 | No hit | No description |
SMART | SM01019 | 5.2E-13 | 187 | 283 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.8E-10 | 195 | 273 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MEMTETGDGL CFQNNYWAKF VEDNSITNGD CLVFSYDGYD LFDFVLFDQF GCEKIVVRDA 60 QPQVKKKVKQ EEEEEDDVVN DDDDNNNCGD EDDCNFVNEE VKNEVDDSGG SGDEDDSDFV 120 IEEDKNEVEE DDDEAKSKQK RNNSCGSKKC TGARDGSSSK KKNNVFDQFG MELFSSGQYI 180 QPKNPYFVTK LRPKDRGGLY IPMDVIKDHN IALPPTLILR DPRGREWKSE VKNWRDGRTW 240 LTSGGWQSLC RVNLVDKDDK CICEFVRPST NDMLLQVTIV REQTTKTMK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 61 | 69 | PQVKKKVKQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019156075.1 | 1e-120 | PREDICTED: B3 domain-containing protein At5g60140-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1091 | 22 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60140.1 | 3e-09 | B3 family protein |