PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

ZF-HD

Protein Properties

Length: 297aa MW: 32224.1 Da PI: 8.3205

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000727.1_g00004.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	103.4	1.5e-32	52	112	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee....gtaaalkCaACgCHRnFHRrevee 59 v+YkeClkNhAaslGghavDGCgEfmps+++ +++a lkCaACgCHRnFHRre+ee Itr_sc000727.1_g00004.1 52 VVTYKECLKNHAASLGGHAVDGCGEFMPSPTAAaaasTNPALLKCAACGCHRNFHRREPEE 112 589***********************987653222458889*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	8.0E-18	40	109	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	3.0E-28	53	110	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	6.0E-29	54	109	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.452	55	109	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	3.4E-17	166	236	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.6E-28	174	237	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	8.3E-26	176	233	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MDLGGLGSSN TTVKTPETEI QTPTILLHHA KPLSFSSNGV LKRHNPLHHA VVVTYKECLK 60 NHAASLGGHA VDGCGEFMPS PTAAAAASTN PALLKCAACG CHRNFHRREP EETLPKALEY 120 QSLHRHRPPP PPPSSDSPSP PPISSSAPHM LLALSTAFSG PPTDTNTPIS APLLQKKRFR 180 TKFTQDQKDK MLEFADKVGW KIQKRDEELI SQFCTQVGVE RGVLKVWMHN NKNTLCKNQS 240 QSNIDNVNGL DSSRNPAAQF NLHQESNGND TQNLQPLHNS EDVSANTIAV NGSSSSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	1e-22	177	234	18	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019157013.1	1e-137	PREDICTED: zinc-finger homeodomain protein 9-like
Swissprot	Q9LHF0	3e-62	ZHD9_ARATH; Zinc-finger homeodomain protein 9
TrEMBL	A0A328D638	1e-90	A0A328D638_9ASTE; Uncharacterized protein
STRING	XP_009620291.1	5e-91	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1088	24	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28920.1	2e-63	homeobox protein 34

Publications ? help Back to Top
Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]