PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Itr_sc000723.1_g00002.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

LBD

Protein Properties

Length: 279aa MW: 31275 Da PI: 6.6382

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000723.1_g00002.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	138.2	2.9e-43	7	105	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +CaaCk++rrkC+++Cv+apyfp +qp+kfanvhk+FGasnv kll++l++++reda++sl+yeAe+r+rdPvyG+vg+i+ lqq+ Itr_sc000723.1_g00002.1 7 PCAACKLQRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELHNSQREDAVNSLAYEAECRLRDPVYGCVGLISILQQK 92 7*********************************************************************************** PP DUF260 87 leqlkaelallke 99 l+q++++l + k+ Itr_sc000723.1_g00002.1 93 LKQVQHDLLSSKR 105 ****9987766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.653	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.6E-43	7	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MSSSSTPCAA CKLQRRKCTQ ECVFAPYFPP DQPQKFANVH KVFGASNVAK LLNELHNSQR 60 EDAVNSLAYE AECRLRDPVY GCVGLISILQ QKLKQVQHDL LSSKRELANY IGPAAMQPLV 120 QHPGFLQHPN NPSNYLMGLP TVVPHAAAQL IAHDSLQQQQ QQPFIEPYHQ LAGVVRTYDQ 180 QQQQQQQQHE LMTFNSGFES GGPVNGAGMF HQMSSAASMP PYDTPYAMQQ PGQEHFDPNH 240 DQIQLQSQPP MQQQQQQQQP PQPQERPKSE EGRSVDPSC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-46	3	110	7	114	LOB family transfactor Ramosa2.1
5ly0_B	1e-46	3	110	7	114	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019182608.1	1e-164	PREDICTED: LOB domain-containing protein 36-like
Swissprot	Q9FKZ3	5e-69	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	A0A2R6R5R3	3e-96	A0A2R6R5R3_ACTCH; LOB domain-containing protein
STRING	Solyc02g065150.1.1	2e-89	(Solanum lycopersicum)
STRING	XP_009774046.1	2e-89	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	6e-69	ASYMMETRIC LEAVES 2-like 1

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]