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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Itr_sc000717.1_g00004.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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| Family |
YABBY |
| Protein Properties |
Length: 197aa MW: 21921.8 Da PI: 8.5807 |
| Description |
YABBY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Itr_sc000717.1_g00004.1 | genome | Kazusa | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | YABBY | 213.1 | 9.1e-66 | 7 | 170 | 4 | 170 |
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnveke 89
++eq+Cy+ CnfCn +lavsvP +sl+++vtvrCGhCt+l svn+a a + + +s + ++++ + n++s + +
Itr_sc000717.1_g00004.1 7 AAAPEQLCYIPCNFCNIVLAVSVPCSSLYEIVTVRCGHCTNLWSVNMAAAFHHHSLSSS--SPPSSPW-QDHHAQVPNYTSSEYMG 89
5689*******************************************998877666554..2223333.33334444444433333 PP
YABBY 90 esastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
+ +s++ ++++ ++ + + v+rPPekr rvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl
Itr_sc000717.1_g00004.1 90 NGSSSKFNHKMPTRPPITTSIEERIVNRPPEKRARVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 170
33333333322223333333334569*****************************************************97 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis |
| GO:1902183 | Biological Process | regulation of shoot apical meristem development |
| GO:2000024 | Biological Process | regulation of leaf development |
| Sequence ? help Back to Top |
| Protein Sequence Length: 197 aa
Download sequence Send
to blast |
MSTCNAAAAP EQLCYIPCNF CNIVLAVSVP CSSLYEIVTV RCGHCTNLWS VNMAAAFHHH 60
SLSSSSPPSS PWQDHHAQVP NYTSSEYMGN GSSSKFNHKM PTRPPITTSI EERIVNRPPE 120
KRARVPSAYN QFIKEEIQRI KANNPDISHR EAFSTAAKNW AHFPHIHFGL MLDSNNNQPK 180
LGVSEGTGKR LCKGLQY
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| Functional Description ? help
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| Source |
Description |
| UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KJ667744 | 9e-64 | KJ667744.1 Solanum sisymbriifolium YAB5 protein mRNA, complete cds. |
| GenBank | KJ667746 | 9e-64 | KJ667746.1 Solanum virginianum YAB5 protein mRNA, complete cds. |
