PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000716.1_g00005.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family B3
Protein Properties Length: 353aa    MW: 39818.8 Da    PI: 7.3254
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000716.1_g00005.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.68.4e-17371131597
                              -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                       B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                              +l +p kfa++  +k      ++l+ + g  W+v l  +  +++ +l+ GWkeFv+++ L+e+D++vFk++g+ +f   v++f
  Itr_sc000716.1_g00005.1  37 QLAIPQKFADNLREK--LADSVSLKGPCGAIWNVDL--EADGDKLYLKYGWKEFVEEHSLRENDVLVFKYNGNLQF--DVTMF 113
                              488******666655..5557***************..99999***************************997666..66665 PP
2B3413.3e-13238326496
                              E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                       B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                              ++   +v k   l++p + a++h  +  +++ ++l   + ++W  k+ y k+s++ + ++GWk+F+ +n L+  D +vF+l+++s+
  Itr_sc000716.1_g00005.1 238 IMQECHVYKGFFLTIPAEWARSHLPQ--KNINVSLH-VNEKTWLAKC-YYKTSSHGLAGSGWKNFALDNFLEKDDACVFSLVSQSD 319
                              566668889999***********645..44567644.588*******.66666666899*********************997665 PP

                              E..EEEE CS
                       B3  90 felvvkv 96 
                               +  + v
  Itr_sc000716.1_g00005.1 320 NSVIFNV 326
                              5444433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.65E-2022114IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.70623116IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.7E-2125114IPR015300DNA-binding pseudobarrel domain
CDDcd100177.31E-1826114No hitNo description
SMARTSM010195.4E-1326116IPR003340B3 DNA binding domain
PfamPF023627.1E-1437109IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-17233330IPR015300DNA-binding pseudobarrel domain
CDDcd100176.60E-18234330No hitNo description
SuperFamilySSF1019368.24E-16234330IPR015300DNA-binding pseudobarrel domain
PfamPF023629.2E-12235326IPR003340B3 DNA binding domain
PROSITE profilePS5086310.743235332IPR003340B3 DNA binding domain
SMARTSM010198.5E-8235332IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MGDSDCGGCK KREENIYWSH FQTVQFFQIL SGHYDLQLAI PQKFADNLRE KLADSVSLKG  60
PCGAIWNVDL EADGDKLYLK YGWKEFVEEH SLRENDVLVF KYNGNLQFDV TMFDGLTLCE  120
KEASYFIRHC EHRELTIRAI TNGTATPISY HDAAANESSH EEFEVTAREN LRKGYASVQQ  180
STQAYGRPRK RPKSGSGGPS HVYPLQLKSN RRPVTEDEKG KAIQAASAAA VGDSFTVIMQ  240
ECHVYKGFFL TIPAEWARSH LPQKNINVSL HVNEKTWLAK CYYKTSSHGL AGSGWKNFAL  300
DNFLEKDDAC VFSLVSQSDN SVIFNVRIFR VVEEVVAPNR VIGTPSRKSM QPT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1187193PRKRPKS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019152836.10.0PREDICTED: B3 domain-containing protein REM16-like isoform X1
TrEMBLA0A484MEE41e-140A0A484MEE4_9ASTE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13043817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-55B3 family protein