PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000716.1_g00004.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family B3
Protein Properties Length: 359aa    MW: 40614.5 Da    PI: 8.6936
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000716.1_g00004.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.34.4e-16611351898
                              --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                       B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                              +p kf+++  +k      ++l+ +sg  W++ l  + ++++ ++++GWkeFv+++ L+e+D+++Fk++g s+f   v +f+
  Itr_sc000716.1_g00004.1  61 VPQKFVNNLREK--LAGCVSLKGPSGAIWNIGL--TACGEKLYFQRGWKEFVEEHSLQENDVLIFKYNGGSQF--DVLMFD 135
                              689999555444..3446***************..********************************998999..777776 PP
2B340.93.6e-13239335198
                              EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                              f+ ++tp +v +   l++p + a+++   +e++++ltl+  + + W+ ++ y+k++ ++v ++  ++Fv +n+L+e D++vF+l +
  Itr_sc000716.1_g00004.1 239 FVAIMTPGNVYRGFFLTIPADWARKYLPTTEKNFDLTLRV-KENAWTTRC-YQKQGHAVVTGTAYRNFVLENNLEEFDVCVFRLAS 322
                              778999999*****************77778999999887.889******.8999999**************************98 PP

                              S.SEE..EEEEE- CS
                       B3  87 r.sefelvvkvfr 98 
                              r ++  + v++fr
  Itr_sc000716.1_g00004.1 323 RsDDIVFDVSIFR 335
                              8677777777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575132No hitNo description
SMARTSM010195.4E-525137IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-1860137IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.04E-1860136IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.67661137IPR003340B3 DNA binding domain
PfamPF023622.9E-1361135IPR003340B3 DNA binding domain
CDDcd100171.40E-1561135No hitNo description
SuperFamilySSF1019362.35E-14238335IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.8E-9239337IPR003340B3 DNA binding domain
PfamPF023626.3E-12239335IPR003340B3 DNA binding domain
CDDcd100171.72E-15239335No hitNo description
PROSITE profilePS508639.629239337IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-16239335IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MGDDCRGCQK WEEHIYWSRF QAVQFFQILS GCYNEKLCMF LVCCMCCVYY GIAPLPVVGA  60
VPQKFVNNLR EKLAGCVSLK GPSGAIWNIG LTACGEKLYF QRGWKEFVEE HSLQENDVLI  120
FKYNGGSQFD VLMFDQQSYC EKEASYFIRK CGHRELINGG KANGNPTPET NSESSVEVIR  180
ATKRKKLTKG GALAQTSVKQ GKSSSASRFQ LKSNRRPVTE EEKGNAIQMA SAVASCYGFV  240
AIMTPGNVYR GFFLTIPADW ARKYLPTTEK NFDLTLRVKE NAWTTRCYQK QGHAVVTGTA  300
YRNFVLENNL EEFDVCVFRL ASRSDDIVFD VSIFRVVEEV VPPSRVTQAV SSRCYNRRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A3e-1421334022146B3 domain-containing transcription factor VRN1
4i1k_B3e-1421334022146B3 domain-containing transcription factor VRN1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019152838.10.0PREDICTED: B3 domain-containing protein REM16-like
TrEMBLA0A068UH601e-103A0A068UH60_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13043817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.15e-55B3 family protein