PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000716.1_g00003.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family B3
Protein Properties Length: 504aa    MW: 56519.5 Da    PI: 10.3762
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000716.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.84.8e-191402231099
                              HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                       B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                               + + +lv+p kf+++  gk e+   + l  +sg  W+v l  + ++++ ++  GWkeFv+++ L+e+D+++Fk++++s+   +vk
  Itr_sc000716.1_g00003.1 140 EGFNEQLVVPEKFVNKLRGKLES--SVALIGPSGAIWNVGL--TARGEELYFDHGWKEFVEEHSLRENDILLFKYKRSSQL--KVK 219
                              556788********999888555..6***************..99*****************************9885555..*** PP

                              EE-S CS
                       B3  96 vfrk 99 
                              +f++
  Itr_sc000716.1_g00003.1 220 IFDR 223
                              **98 PP
2B337.25.1e-12388475187
                              EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkl 84 
                              f+ ++ p +v ++  +++p + a+++   +e++++l l+  + ++W  ++  r ksgr  ++ +kG ++Fv +n+++e D++vF++
  Itr_sc000716.1_g00003.1 388 FIVKMAPGYVYRRFEMTIPGDWAKAYLPATERNFDLALRV-KDKTWISRCYQRVKSGRrtILSGKGYRSFVLENQIEEFDVCVFEM 472
                              78899999******************66677889999877.889******55555555558888*********************7 PP

                              -SS CS
                       B3  85 dgr 87 
                              +++
  Itr_sc000716.1_g00003.1 473 ERK 475
                              643 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086314.706131224IPR003340B3 DNA binding domain
SMARTSM010194.3E-14132224IPR003340B3 DNA binding domain
PfamPF023621.2E-15139223IPR003340B3 DNA binding domain
CDDcd100173.15E-17141222No hitNo description
Gene3DG3DSA:2.40.330.102.2E-20143224IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-19144223IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.65E-11387490IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.6E-13388490IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.333388492IPR003340B3 DNA binding domain
CDDcd100173.22E-13388490No hitNo description
SMARTSM010192.2E-5388492IPR003340B3 DNA binding domain
PfamPF023621.3E-10388476IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MKWSARNANN SDTGLRDKKC NQRLEGVTAR RRRDSRLAEA RRRLGAGADL KRRLALDSGV  60
TKKKKKKPEE EKEEIGGGRT EKIYQSVLSK SLSTVILARL PTPTSPNHVI SSTHSPMGRP  120
TPPADLLLLS PFSPLHILSE GFNEQLVVPE KFVNKLRGKL ESSVALIGPS GAIWNVGLTA  180
RGEELYFDHG WKEFVEEHSL RENDILLFKY KRSSQLKVKI FDRESQCENE YSYFVRKCEH  240
RMHSSGGNKT KSNPTLALDL VPAPAPTPTP APAPATTTSH HETSSGSSSV IFIGTTMWSP  300
PSERITQQQA SGEQATPPKR KRKLRPEQIE LEVRIKSDVD GLEAPSTATS SRSLLKSNKL  360
KSNRRPVTEE EKRKAIQMAN AAVSPTGFIV KMAPGYVYRR FEMTIPGDWA KAYLPATERN  420
FDLALRVKDK TWISRCYQRV KSGRRTILSG KGYRSFVLEN QIEEFDVCVF EMERKDGSDK  480
DISFNVSIFR VVEDAIPPSL VTPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15066KRRLALDSGVTKKKKKK
2317323PKRKRKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019152839.11e-148PREDICTED: B3 domain-containing protein REM16-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13043817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-34B3 family protein