PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000710.1_g00009.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family Trihelix
Protein Properties Length: 589aa    MW: 67223.4 Da    PI: 7.8342
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000710.1_g00009.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix46.31.1e-14127180260
                 trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkr 60 
                              W+++evlaL+++r++me+++ +       We+vs+k++e gf+rsp++Cke++e+ n+ 
  Itr_sc000710.1_g00009.1 127 WSNEEVLALLRIRSSMENWFPDY-----TWEHVSRKLAELGFKRSPEKCKERFEEENRN 180
                              *********************98.....9*************************98765 PP
2trihelix988e-31479569186
                 trihelix   1 rWtkqevlaLiearremeerlrrgk......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 
                              rW+++evlaLi++r +++++ ++++      +k+plWe++s+ m+e g++rs+k+Ckekwen+nk+++k+k+++kkr s +s+tcp
  Itr_sc000710.1_g00009.1 479 RWPREEVLALINMRCSLNNNNNSDNsskdggAKGPLWERISQGMQELGYNRSAKRCKEKWENINKYFRKTKDNNKKR-SVDSRTCP 563
                              8**************7777766543344444*********************************************8.78889*** PP

                 trihelix  81 yfdqle 86 
                              yf+ql 
  Itr_sc000710.1_g00009.1 564 YFHQLS 569
                              ****96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.58123180IPR001005SANT/Myb domain
PROSITE profilePS500907.05125178IPR017877Myb-like domain
PfamPF138371.4E-11126200No hitNo description
SMARTSM007179.6E-4476544IPR001005SANT/Myb domain
CDDcd122037.32E-23478549No hitNo description
PfamPF138372.7E-20478570No hitNo description
PROSITE profilePS500906.888479542IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001158Molecular Functionenhancer sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MFDGVPDQFH HFIASSRAPL QIPFPFPLHA TTSPPPPPPQ PPPPPPPVTP LAPTFPTFDP  60
YPSHQTLQHH QHQQHQHHHL HHHLSSPPPP PPQPKNEGSK EDQTTTLLST SLVLERERSS  120
GEPGGPWSNE EVLALLRIRS SMENWFPDYT WEHVSRKLAE LGFKRSPEKC KERFEEENRN  180
LNSLSFNKNS FRFFSELDEL YQHQGGDHKN QQNEDSVQTR NINNQPPALR REAAAVAVAV  240
AAEAQSLEEG SGNVDHNSTT SRSSKSNNNN NGDEKKRKRK GKRKRELEMF KGFCEEIVER  300
IMAQQEELHT KIIEDMVKRE EEKIARDEAW KSQERERLNK EIEAREKEHE IASNRQAKII  360
EFLNKFASSS SPSLNSPLDQ SLFDKFNDLF DPPNNNPKTP SSTHPHNEIM GTKKTKKASS  420
FPHQNPTSNN PTQSSTNPSF TSPTETLIMP SMDLGPENHP TPQSKDTQLE PNTQDIGKRW  480
PREEVLALIN MRCSLNNNNN SDNSSKDGGA KGPLWERISQ GMQELGYNRS AKRCKEKWEN  540
INKYFRKTKD NNKKRSVDSR TCPYFHQLSS LYSQGKIRGD SPENRSSAD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1274279KKRKRK
2274282KKRKRKGKR
3278285RKGKRKRE
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00011PBMTransfer from AT5G28300Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019186102.10.0PREDICTED: trihelix transcription factor GTL2-like isoform X1
TrEMBLA0A2R6QLD81e-162A0A2R6QLD8_ACTCH; Trihelix transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA137001013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.13e-64Trihelix family protein