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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000707.1_g00018.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | ZF-HD | ||||||||
Protein Properties | Length: 255aa MW: 28596.8 Da PI: 7.3105 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 101.2 | 7.1e-32 | 52 | 107 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 k rY+eC+kNhA+ +GghavDGCgEfmp+ ge g+ +alkCaAC+CHRnFHR+e ++ Itr_sc000707.1_g00018.1 52 KPRYRECQKNHAVGIGGHAVDGCGEFMPA-GEFGSLDALKCAACNCHRNFHRKEINT 107 679*************************9.888********************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.9E-28 | 54 | 105 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 6.9E-30 | 54 | 105 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 5.0E-21 | 54 | 104 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.084 | 55 | 104 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-28 | 164 | 235 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.64E-16 | 165 | 234 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.0E-25 | 173 | 229 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MEFEDQQHSG GNGTGPGYDS LSNSNSAHPR MPENDDGAGD LPVTEPPLQV RKPRYRECQK 60 NHAVGIGGHA VDGCGEFMPA GEFGSLDALK CAACNCHRNF HRKEINTAAL VPVGYHHHHR 120 APTGYLHHYH HHAPPLQRPL ALPSISGSAY REELEELDLE MDTATPNSGG ASKKRFRTKF 180 TEVQKAKMME LAERLGWRIQ KESEEAVEQF CSEYGVRRHV FKVWMHNNKH TVAKKTLEPN 240 NNNNSNQPNQ DPPRI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 3e-23 | 172 | 231 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019185230.1 | 1e-155 | PREDICTED: zinc-finger homeodomain protein 1-like isoform X1 | ||||
Swissprot | Q6YXH5 | 1e-70 | ZHD1_ORYSJ; Zinc-finger homeodomain protein 1 | ||||
TrEMBL | A0A1S3ZEH4 | 6e-82 | A0A1S3ZEH4_TOBAC; zinc-finger homeodomain protein 2-like isoform X2 | ||||
TrEMBL | A0A1U7YG84 | 6e-82 | A0A1U7YG84_NICSY; zinc-finger homeodomain protein 2-like isoform X2 | ||||
STRING | XP_009802157.1 | 2e-81 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA518 | 24 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 4e-64 | homeobox protein 22 |
Publications ? help Back to Top | |||
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