PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000682.1_g00004.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 273aa MW: 30246.5 Da PI: 10.0168

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000682.1_g00004.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.2	1.2e-07	84	130	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 +Er+RR+++ + L l+P ++K s ++ L+++v+Y+k+L Itr_sc000682.1_g00004.1 84 RDVERQRRKEMGGLYKSLVGLIPYeY---IKGKRSTSDRLQETVRYVKDL 130 579*******************77...*****************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.03E-7	78	135	No hit	No description
PROSITE profile	PS50888	11.865	78	130	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.84E-12	78	146	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0024	84	136	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.1E-5	85	130	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.1E-8	85	146	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MEQISSTFPF QDGLLHFSPI SARQQTRPPV SDHNSNPLLV FDLLKGDEDV VPTMKHNVVL 60 QQHQQLQQIR NPNNPHQERK IIRRDVERQR RKEMGGLYKS LVGLIPYEYI KGKRSTSDRL 120 QETVRYVKDL RKRVEKLSAK RDELKGVTEP AAADSTSNSL LRPAAASSSS LMKGRDGCNN 180 NDEQSRVTVK ACRAGVEVTV NVGAQKIKGG GVSLSKILKV LVGDGLSINN CCSIKVNDRL 240 LQTIEAEVIG GGSIDPIQLE QKLSVLVYNH GGF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019155888.1	1e-156	PREDICTED: transcription factor bHLH36-like
TrEMBL	A0A328EDA1	1e-75	A0A328EDA1_9ASTE; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA598	24	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51790.1	2e-29	bHLH family protein