PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000680.1_g00005.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 500aa    MW: 56367.5 Da    PI: 4.5891
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000680.1_g00005.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS144.51e-441414992373
                     GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                               +lL + Aea ++g+ ela+ + + +   ++p g+p++R+a+ +         +         p+++ ++++s +  aa+ +f+++
  Itr_sc000680.1_g00005.1 141 HHLLEAYAEATEDGHEELAEVIAKCITGKVNPFGEPIERVAFNLF--------H---------PSEDLQKESSNNFEAAFMAFYQI 209
                              68899999********************************98543........3.........2333333345666778889**** PP

                     GRAS  88 sPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfA 169
                               P+ +f+h++aN+aIlea+ ++ e+v i+Dfd+++G+QWp+L++a+  +p +   l++  ++ ++++   s+ + e+t++rL + A
  Itr_sc000680.1_g00005.1 210 LPYGRFAHFAANSAILEALPSSaETVTIVDFDMGEGIQWPPLIEAMGPKPIS---LKLISIKTEQEStssSRWRFETTQRRLYDHA 292
                              *******************99889**********************998666...555555555444445999************* PP

                     GRAS 170 eelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvksl......sPkvvvvveqe..ad 247
                              +++g +++ + +   ++e+l +e+ r+  +  la n++++l ++ +++  ++    e+Lk+ k+l       + +vv+++ e   +
  Itr_sc000680.1_g00005.1 293 RQCGQKLQVEEM---TIEELVTETKRTTGKQWLAFNCMFRLPHMAKKQPRSQA--MEFLKIAKELlsssaiPSGIVVFADGEprGN 373
                              ********9997...99999999999999***************966666655..99999999873222214569*****995544 PP

                     GRAS 248 h.nsesFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplse 331
                                +s  +   f + + +y +l +s+e+ +p +  e+ri +E  ++++ i++       +    + + +  ++ l+e G++  +ls 
  Itr_sc000680.1_g00005.1 374 GdSSRGYTSSFNNQFIHYKSLIESMESYFPVNLaEARIALESLFFSPFICSTSWFHDWQ----ESKIKGTSDNLSETGLQGRKLSM 455
                              445669************************98779***************998888777....667777899************** PP

                     GRAS 332 kaakqaklllrkvk.sdgyrve.eesgslvlgWkdrpLvsvSaW 373
                              ++  qak l+++ +     r+e +++++++l W++ pL+ vS W
  Itr_sc000680.1_g00005.1 456 ENLIQAKVLVSEREtAYKVRIEeQKQHEMILEWRGTPLMGVSTW 499
                              **************4444555545689999************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098520.39114478IPR005202Transcription factor GRAS
PfamPF035143.6E-42141499IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MMQSVLFQPS WPSHNVQFST PPQTIFCGLY DETYIHSSTV ITTDSSDSPL YSSFAALFPD  60
AFTELTSLQN DTAMDRLESI EFEDFCQWLN NSESEEQPKG DMWSPSLSVV SSEASMVLPS  120
RNTAVTVPGT GMEVDGLTNL HHLLEAYAEA TEDGHEELAE VIAKCITGKV NPFGEPIERV  180
AFNLFHPSED LQKESSNNFE AAFMAFYQIL PYGRFAHFAA NSAILEALPS SAETVTIVDF  240
DMGEGIQWPP LIEAMGPKPI SLKLISIKTE QESTSSSRWR FETTQRRLYD HARQCGQKLQ  300
VEEMTIEELV TETKRTTGKQ WLAFNCMFRL PHMAKKQPRS QAMEFLKIAK ELLSSSAIPS  360
GIVVFADGEP RGNGDSSRGY TSSFNNQFIH YKSLIESMES YFPVNLAEAR IALESLFFSP  420
FICSTSWFHD WQESKIKGTS DNLSETGLQG RKLSMENLIQ AKVLVSERET AYKVRIEEQK  480
QHEMILEWRG TPLMGVSTWM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-1414849914374GRAS family transcription factor containing protein, expressed
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019187541.10.0PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBLA0A1S3ZG461e-176A0A1S3ZG46_TOBAC; nodulation-signaling pathway 2 protein-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53611938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17490.12e-20RGA-like protein 3