PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Itr_sc000676.1_g00008.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

WOX

Protein Properties

Length: 268aa MW: 30123.6 Da PI: 4.9539

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000676.1_g00008.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.6	3.4e-21	87	147	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +p++++++e++++l +++e++V++WFqNrRa+ k+ Itr_sc000676.1_g00008.1 87 RQRWTPTPLQLQTLERIFDQgNGTPTKQKIKEITDELsrhgQISETNVYNWFQNRRARSKR 147 89***************99************************************97 PP
2	Wus_type_Homeobox	97.2	1.3e-31	87	149	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 r+RWtPtp Q++ Le+++++G tP+k++i++it eL+++G+i+++NV++WFQNr+aR+++kq Itr_sc000676.1_g00008.1 87 RQRWTPTPLQLQTLERIFDQGNGTPTKQKIKEITDELSRHGQISETNVYNWFQNRRARSKRKQ 149 89***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-16	83	151	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.224	83	148	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.75E-18	84	152	IPR009057	Homeodomain-like
SMART	SM00389	5.4E-14	85	152	IPR001356	Homeobox domain
Pfam	PF00046	6.2E-19	87	147	IPR001356	Homeobox domain
CDD	cd00086	3.08E-14	87	149	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MEWEKQQPPP PPPPTEDLGG AGMFVKVMTD EQMEVLRKQI AVYATICDQL VELHKSVASQ 60 HDLAGARLGN LYCDPLVTCA GHKLTGRQRW TPTPLQLQTL ERIFDQGNGT PTKQKIKEIT 120 DELSRHGQIS ETNVYNWFQN RRARSKRKQQ VVSTNNIESE VETEVESQDD KVTTKPEDLQ 180 SSHIPTSRSE DVCYQNSEVS SAMHSVGTKT NKAESAFASE STSKPAGSFD QMSFYGLSNP 240 RMDQLIGKME VFESYTPYLE AEEYNLTG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	140	148	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019177336.1	1e-179	PREDICTED: WUSCHEL-related homeobox 8-like
Swissprot	O81788	7e-83	WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBL	A0A1S3XRB3	1e-140	A0A1S3XRB3_TOBAC; WOX13b
TrEMBL	A0A1U7WBQ3	1e-140	A0A1U7WBQ3_NICSY; WUSCHEL-related homeobox 8-like
TrEMBL	A0A3Q7F8C3	1e-140	A0A3Q7F8C3_SOLLC; Uncharacterized protein
STRING	Solyc02g082670.2.1	1e-141	(Solanum lycopersicum)
STRING	XP_009777417.1	1e-141	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5675	24	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	7e-86	WUSCHEL related homeobox 13

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605]