PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000676.1_g00005.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

CAMTA

Protein Properties

Length: 1052aa MW: 119351 Da PI: 6.5179

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000676.1_g00005.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	181.7	8.3e-57	21	137	2	118
CG-1 2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYah 87 l+ ++rwl++ ei++iL+n++k++++ e++++p++gsl+L++rk++ryfrkDG++w+kkkdgktv+E+he+LK g+++vl+cyYah Itr_sc000676.1_g00005.1 21 LEAQHRWLRPAEICEILKNYQKFQIAPEPPNTPPNGSLFLFDRKVLRYFRKDGHKWRKKKDGKTVKEAHERLKAGSIDVLHCYYAH 106 5679******************************************************************************** PP CG-1 88 seenptfqrrcywlLeeelekivlvhylevk 118 +een++fqrr+yw+Leee+++ivlvhy+evk Itr_sc000676.1_g00005.1 107 GEENENFQRRSYWMLEEEMSHIVLVHYREVK 137 **************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	81.963	16	142	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.6E-78	19	137	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	8.2E-50	22	135	IPR005559	CG-1 DNA-binding domain
Pfam	PF01833	5.2E-6	476	555	IPR002909	IPT domain
SuperFamily	SSF81296	2.33E-16	477	563	IPR014756	Immunoglobulin E-set
Gene3D	G3DSA:2.60.40.10	2.4E-6	477	551	IPR013783	Immunoglobulin-like fold
PROSITE profile	PS50297	20.288	631	770	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.01E-14	646	758	No hit	No description
SuperFamily	SSF48403	3.42E-18	650	761	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	6.0E-19	651	764	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	3.2E-8	671	761	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	9.591	699	731	IPR002110	Ankyrin repeat
SMART	SM00248	0.0023	699	728	IPR002110	Ankyrin repeat
SMART	SM00248	38	738	767	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	3.98E-7	870	925	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	31	874	896	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	6.852	875	904	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.01	897	919	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.578	898	922	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	2.0E-4	902	919	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009409	Biological Process	response to cold
GO:0010150	Biological Process	leaf senescence
GO:0042742	Biological Process	defense response to bacterium
GO:0050832	Biological Process	defense response to fungus
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005516	Molecular Function	calmodulin binding

Sequence ? help Back to Top
Protein Sequence Length: 1052 aa Download sequence Send to blast
MATESRRYGL NAQLDIDQIL LEAQHRWLRP AEICEILKNY QKFQIAPEPP NTPPNGSLFL 60 FDRKVLRYFR KDGHKWRKKK DGKTVKEAHE RLKAGSIDVL HCYYAHGEEN ENFQRRSYWM 120 LEEEMSHIVL VHYREVKGNR VNFNHVKESQ IAIPGYQESE DTTSLNSAVA SEYEDAESVY 180 IQQKNPVAHS FLEVQSSMMQ KAQDELSVSL YPGPLANDHQ GQFSAISGIN FPSIVQGNQN 240 RNTANIYVPC QGHGFTSWKN IEETSTARYQ PALSSMNSDT ISAVQGQEDT TIGFTNNLGN 300 KQKLMNCVYA LEEWKTSEGD SLQSSEWSVD QKLNPDQACD FSTKQKPIEF CDFPTKHKHP 360 MQNDLQVQLT DADGGNFAKT KLDSDLNMRI NTDHSALKQP LLNGFLRQEL KKLDSFDRWV 420 NKELEDVNEP HMQTSSGNYW DNVGNEDGVD ESTIASQVQQ DTYVLSPSLS QDQFFSITEF 480 SPNWAYAGTE IKIRITGRFL KSQQEVDKCN WACMFGELEV PAEVISDGVL RCLTPIQKVG 540 RVPFYVTCSN RLACSEVREF EFRVNEIENA NSGSSKESLL NMRFGNLLSL ESVSFENSVP 600 GNMDYVSHLT STINSLLKED NSEWEHMFPH TSEDQLHQKF LKEKLRLWLL QKVVEGGKGP 660 NVLDESGQGV LHFAAALDYD WAIPPTLVAG VNVNFRDVNG WTALHWAAFC GRERMVVFLI 720 ALGAAPGALT DPTPQHPSGR TPADLASSNG HKGIAGYLAE ASLSTHLSSL ELKENKEDKN 780 RDASGVKAIH GVSERAATPV NDGDLPYGLS LKDSLAAVRN ATQAAARIHQ VFRVQSFQRK 840 QIKEYGDGEV GLSDERALSL LAVRKNRAGQ NNEPLHVAAM RIQNKFRSWK GRKDFLLIRQ 900 QIIKIQAHVR GHQVRKNYRK ITWSVGILEK VILRWRRKGS GLRGFKSEAL AAEGHNMQDQ 960 PKQEDDYDFL KEGRKQTEER LQKALARVQS MVQYPEARDQ YRRLLNVVSE MQETKNKYDK 1020 VLKRSGRTYD FDEDLMELEA FLNDDTFMPT AS

Sequence ? help Back to Top

Protein Sequence Length: 1052 aa Download sequence Send to blast

MATESRRYGL NAQLDIDQIL LEAQHRWLRP AEICEILKNY QKFQIAPEPP NTPPNGSLFL  60
FDRKVLRYFR KDGHKWRKKK DGKTVKEAHE RLKAGSIDVL HCYYAHGEEN ENFQRRSYWM  120
LEEEMSHIVL VHYREVKGNR VNFNHVKESQ IAIPGYQESE DTTSLNSAVA SEYEDAESVY  180
IQQKNPVAHS FLEVQSSMMQ KAQDELSVSL YPGPLANDHQ GQFSAISGIN FPSIVQGNQN  240
RNTANIYVPC QGHGFTSWKN IEETSTARYQ PALSSMNSDT ISAVQGQEDT TIGFTNNLGN  300
KQKLMNCVYA LEEWKTSEGD SLQSSEWSVD QKLNPDQACD FSTKQKPIEF CDFPTKHKHP  360
MQNDLQVQLT DADGGNFAKT KLDSDLNMRI NTDHSALKQP LLNGFLRQEL KKLDSFDRWV  420
NKELEDVNEP HMQTSSGNYW DNVGNEDGVD ESTIASQVQQ DTYVLSPSLS QDQFFSITEF  480
SPNWAYAGTE IKIRITGRFL KSQQEVDKCN WACMFGELEV PAEVISDGVL RCLTPIQKVG  540
RVPFYVTCSN RLACSEVREF EFRVNEIENA NSGSSKESLL NMRFGNLLSL ESVSFENSVP  600
GNMDYVSHLT STINSLLKED NSEWEHMFPH TSEDQLHQKF LKEKLRLWLL QKVVEGGKGP  660
NVLDESGQGV LHFAAALDYD WAIPPTLVAG VNVNFRDVNG WTALHWAAFC GRERMVVFLI  720
ALGAAPGALT DPTPQHPSGR TPADLASSNG HKGIAGYLAE ASLSTHLSSL ELKENKEDKN  780
RDASGVKAIH GVSERAATPV NDGDLPYGLS LKDSLAAVRN ATQAAARIHQ VFRVQSFQRK  840
QIKEYGDGEV GLSDERALSL LAVRKNRAGQ NNEPLHVAAM RIQNKFRSWK GRKDFLLIRQ  900
QIIKIQAHVR GHQVRKNYRK ITWSVGILEK VILRWRRKGS GLRGFKSEAL AAEGHNMQDQ  960
PKQEDDYDFL KEGRKQTEER LQKALARVQS MVQYPEARDQ YRRLLNVVSE MQETKNKYDK  1020
VLKRSGRTYD FDEDLMELEA FLNDDTFMPT AS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:18298954, ECO:0000269\|PubMed:19122675, ECO:0000269\|PubMed:19270186, ECO:0000269\|PubMed:21900483, ECO:0000269\|PubMed:22345509, ECO:0000269\|PubMed:22371088, ECO:0000269\|PubMed:23072934, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25157030, ECO:0000269\|PubMed:28351986, ECO:0000269\|PubMed:28407487, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00042	PBM	Transfer from AT2G22300	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269\|PubMed:11162426, ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:22345509}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019177324.1	0.0	PREDICTED: calmodulin-binding transcription activator 3-like isoform X2
Swissprot	Q8GSA7	0.0	CMTA3_ARATH; Calmodulin-binding transcription activator 3
TrEMBL	A0A1S3YKL0	0.0	A0A1S3YKL0_TOBAC; Calmodulin-binding transcription activator 4
STRING	XP_009613615.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2230	21	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22300.2	0.0	signal responsive 1

Publications ? help Back to Top
Zhang L,Du L,Shen C,Yang Y,Poovaiah BW Regulation of plant immunity through ubiquitin-mediated modulation of Ca(2+) -calmodulin-AtSR1/CAMTA3 signaling. Plant J., 2014. 78(2): p. 269-81 [PMID:24528504] Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Rahman H,Yang J,Xu YP,Munyampundu JP,Cai XZ Phylogeny of Plant CAMTAs and Role of AtCAMTAs in Nonhost Resistance to Xanthomonas oryzae pv. oryzae. Front Plant Sci, 2016. 7: p. 177 [PMID:26973658] Benn G, et al. Plastidial metabolite MEcPP induces a transcriptionally centered stress-response hub via the transcription factor CAMTA3. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(31): p. 8855-60 [PMID:27432993] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lolle S, et al. Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles. Cell Host Microbe, 2017. 21(4): p. 518-529.e4 [PMID:28407487] Kim YS, et al. CAMTA-Mediated Regulation of Salicylic Acid Immunity Pathway Genes in Arabidopsis Exposed to Low Temperature and Pathogen Infection. Plant Cell, 2017. 29(10): p. 2465-2477 [PMID:28982964] Jacob F, et al. A dominant-interfering camta3 mutation compromises primary transcriptional outputs mediated by both cell surface and intracellular immune receptors in Arabidopsis thaliana. New Phytol., 2018. 217(4): p. 1667-1680 [PMID:29226970]