PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000659.1_g00010.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bZIP

Protein Properties

Length: 312aa MW: 34536.4 Da PI: 5.6338

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000659.1_g00010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.3	2.5e-11	185	229	5	49
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 kr +r NR +A+rsR RK+++i eLe+ v +L+ae + L ++ Itr_sc000659.1_g00010.1 185 KRIKRILANRQSAQRSRVRKLQYISELERSVTTLQAEVSVLSPRV 229 899*********************************988776655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.6E-13	181	245	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.576	183	235	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.7E-12	185	236	No hit	No description
Pfam	PF00170	9.6E-10	185	229	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.29E-11	185	239	No hit	No description
CDD	cd14703	5.58E-22	186	236	No hit	No description
PROSITE pattern	PS00036	0	188	203	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MAQLPPRVPN MAPNWHDFAL QKPPPPPAAA AAPSWVDEFL DFSSAKRGSH RRSISDSIAF 60 LESPMVEECR RLSAPSAGGS AAMNINAAEF ERFDDEQLMS MFNDDIATSI GPNSNPSSPS 120 DHNSINEDTK MISASDHHLQ HPAQELKTEP EEVQSSCKSD DQTATAAEHA ASAAENSSEK 180 IVDPKRIKRI LANRQSAQRS RVRKLQYISE LERSVTTLQA EVSVLSPRVA FLDHQRLVLN 240 VDNSVLKQRI AALAQDKVFK DAHQDALKRE IERLRQIYYQ QNLKKMEDGT PPQPPPAETN 300 GGGSEKEEQL AN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator. {ECO:0000269\|PubMed:17719007}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019159426.1	0.0	PREDICTED: basic leucine zipper 61-like
Swissprot	Q9M2K4	1e-108	BZP61_ARATH; Basic leucine zipper 61
TrEMBL	A0A1J6HY07	1e-153	A0A1J6HY07_NICAT; Basic leucine zipper 34
STRING	XP_009777081.1	1e-152	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1775	24	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58120.1	4e-96	bZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]