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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000656.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 254aa MW: 28717.2 Da PI: 6.0641 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.5 | 4.6e-18 | 67 | 117 | 6 | 56 |
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +f++eq++ Le++F + ++ a+++ +LA+ lgL+ rqV +WFqN+Ra++k Itr_sc000656.1_g00001.1 67 RFSDEQVKLLESMFTLETKLEAHKKLQLARDLGLQPRQVGIWFQNKRARWK 117 69************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 112.3 | 3.1e-36 | 66 | 155 | 4 | 93 |
HD-ZIP_I/II 4 rrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +r+s+eqvklLE++F+ e+kLe ++K +lar+Lglqprqv +WFqn+RAR+k+kq+E+dy+ Lk+++d+l+ + + L+ke+++L Itr_sc000656.1_g00001.1 66 KRFSDEQVKLLESMFTLETKLEAHKKLQLARDLGLQPRQVGIWFQNKRARWKAKQIEQDYRELKAKFDTLNLQFDYLKKENHSLLI 151 8***********************************************************************************98 PP HD-ZIP_I/II 90 elke 93 +l++ Itr_sc000656.1_g00001.1 152 QLEK 155 8876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.14E-17 | 50 | 120 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.0E-18 | 52 | 119 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 9.8E-16 | 57 | 123 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 15.758 | 59 | 119 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.96E-13 | 67 | 120 | No hit | No description |
Pfam | PF00046 | 1.8E-15 | 67 | 117 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 3.3E-5 | 90 | 99 | IPR000047 | Helix-turn-helix motif |
PRINTS | PR00031 | 3.3E-5 | 99 | 115 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 2.2E-11 | 119 | 157 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MPTNPTTKAR ATHNINSHFS TILEGKSCSN SKMEGGDDQY PGAPEDEGPV RCQQPSNKKK 60 GTANCKRFSD EQVKLLESMF TLETKLEAHK KLQLARDLGL QPRQVGIWFQ NKRARWKAKQ 120 IEQDYRELKA KFDTLNLQFD YLKKENHSLL IQLEKLRYEV ENRKPQDSKG SKDANFETNW 180 KEKAAAGCLN GGAEDAKEVG INEYLEQQEE EAELLKLQGG LGDCSPLSSQ ENWCCIGLGD 240 AFCHSCGTSE LWDI |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019195613.1 | 1e-115 | PREDICTED: homeobox-leucine zipper protein ATHB-12-like | ||||
TrEMBL | A0A1J6KHK4 | 1e-52 | A0A1J6KHK4_NICAT; Homeobox-leucine zipper protein athb-7 | ||||
STRING | XP_009798092.1 | 1e-52 | (Nicotiana sylvestris) | ||||
STRING | XP_009611805.1 | 1e-52 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2041 | 23 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 2e-34 | homeobox 7 |