PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000654.1_g00006.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

G2-like

Protein Properties

Length: 349aa MW: 38166.2 Da PI: 6.0165

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000654.1_g00006.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.2	3.2e-32	95	148	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+ave+LGG+++AtPk +l+lm++kgL+++hvkSHLQ+YR+ Itr_sc000654.1_g00006.1 95 PRLRWTPDLHLCFVHAVERLGGQDRATPKLVLQLMNIKGLSIAHVKSHLQMYRS 148 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.55	91	151	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.6E-30	91	149	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.33E-15	92	150	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.5E-23	95	150	IPR006447	Myb domain, plants
Pfam	PF00249	3.6E-9	96	147	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MKAAETDQKV MEEMMMKEGI SCSTEDSKSG PEFLGAEIEP EGEEEEEEEE EDGKGEKGNN 60 GSSSSNSTVE ENNGKKLLGN SSGGSVRQYV RSKTPRLRWT PDLHLCFVHA VERLGGQDRA 120 TPKLVLQLMN IKGLSIAHVK SHLQMYRSKK ADEPNPVTPN GRLLLGNGDS HIFNFSQLQR 180 LQGFNPTPVT TSLRFDDSSW SHRHHHQPYS SVYNPYLNGG AAAMIRHGFG GNYVNGGRSE 240 FPMMSRQCSD NVAAPPQLFP NQRIPAAAQN GEVTAAGAGK RKLPADSDVN LDLNLSLKTR 300 DGGGGNDEKR AKGDDKYEDS TNLSLSLFPS SQNDDQTTTV KKTTLDLTL

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MKAAETDQKV MEEMMMKEGI SCSTEDSKSG PEFLGAEIEP EGEEEEEEEE EDGKGEKGNN  60
GSSSSNSTVE ENNGKKLLGN SSGGSVRQYV RSKTPRLRWT PDLHLCFVHA VERLGGQDRA  120
TPKLVLQLMN IKGLSIAHVK SHLQMYRSKK ADEPNPVTPN GRLLLGNGDS HIFNFSQLQR  180
LQGFNPTPVT TSLRFDDSSW SHRHHHQPYS SVYNPYLNGG AAAMIRHGFG GNYVNGGRSE  240
FPMMSRQCSD NVAAPPQLFP NQRIPAAAQN GEVTAAGAGK RKLPADSDVN LDLNLSLKTR  300
DGGGGNDEKR AKGDDKYEDS TNLSLSLFPS SQNDDQTTTV KKTTLDLTL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-17	96	150	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-17	96	150	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-17	96	150	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-17	96	150	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00301	DAP	Transfer from AT2G40260	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019192424.1	1e-177	PREDICTED: two-component response regulator ARR18-like
TrEMBL	A0A328E442	4e-89	A0A328E442_9ASTE; Uncharacterized protein
STRING	XP_009791663.1	9e-78	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8573	21	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40260.1	2e-40	G2-like family protein