PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000653.1_g00027.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family WRKY
Protein Properties Length: 467aa    MW: 51099.6 Da    PI: 7.4624
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000653.1_g00027.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.47.1e-34198254259
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              dDgynWrKYGqK++kg efprsYY+Ct+++Cpvkkkvers  d++++ei+Y+g+Hnh+
  Itr_sc000653.1_g00027.1 198 DDGYNWRKYGQKPIKGGEFPRSYYKCTHPNCPVKKKVERSL-DGQITEIIYKGKHNHQ 254
                              8****************************************.***************8 PP
2WRKY1084.7e-34367424259
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              +Dgy+WrKYGqK+vkg++fprsYY+Ct+agC+v+k+ver a+dpk+v++tYeg+Hnh+
  Itr_sc000653.1_g00027.1 367 EDGYRWRKYGQKVVKGNPFPRSYYKCTTAGCNVRKHVERLASDPKAVITTYEGKHNHD 424
                              8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.5E-30194256IPR003657WRKY domain
SuperFamilySSF1182902.22E-26196256IPR003657WRKY domain
SMARTSM007741.2E-37197255IPR003657WRKY domain
PfamPF031066.8E-26198254IPR003657WRKY domain
PROSITE profilePS5081124.007198256IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-36351426IPR003657WRKY domain
SuperFamilySSF1182901.44E-29358426IPR003657WRKY domain
PROSITE profilePS5081137.803361426IPR003657WRKY domain
SMARTSM007748.1E-40366425IPR003657WRKY domain
PfamPF031062.7E-26367424IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MAENHAGRAS RSSSSLRLAS ARPSITLPQP SPIFTGGVSP GPMTLVSSLF GENDQDSECR  60
SFSQLLAGAM DSPGARPARR GDPNSKEEEA SFRHNGSAIT QPSIFTIPPG LSPASLLDSP  120
GQGHFGISHQ QALAQLTAQP CIQSDHPSSS LPPAPQFFQL QMPLPGRDHN SIKESSSNVS  180
HSDNVSEPCS FPVDKPADDG YNWRKYGQKP IKGGEFPRSY YKCTHPNCPV KKKVERSLDG  240
QITEIIYKGK HNHQPPQPRK GAKDTGNQNG LQGSSELNLM DGVPFQSLPM KDQESSLATQ  300
EHMSGSSESE KVGDAEARMD RRDDDDDERE SKRRATEGQI PEPVTSHRTV TEPKIVVQTT  360
SEVDLLEDGY RWRKYGQKVV KGNPFPRSYY KCTTAGCNVR KHVERLASDP KAVITTYEGK  420
HNHDVPAARN SSHNTANNAP ALQLRQHNPA AVDNQAALLQ FKEEQIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-41198427878Probable WRKY transcription factor 4
2lex_A6e-41198427878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019170515.10.0PREDICTED: probable WRKY transcription factor 3
SwissprotQ9XI901e-140WRKY4_ARATH; Probable WRKY transcription factor 4
SwissprotQ9ZQ701e-140WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A1U7XTB80.0A0A1U7XTB8_NICSY; probable WRKY transcription factor 4
TrEMBLA0A2G2VL630.0A0A2G2VL63_CAPBA; Putative WRKY transcription factor 3
STRINGXP_009794188.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41072445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-131WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]